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  • 1
    Publication Date: 2024-02-07
    Description: Little is known about dispersal in deep-sea ecosystems, especially for sponges, which are abundant ecosystem engineers. Understanding patterns of gene flow in deep-sea sponges is essential, especially in areas where rising pressure from anthropogenic activities makes difficult to combine management and conservation. Here, we combined population genomics and oceanographic modelling to understand how Northeast Atlantic populations (Cantabrian Sea to Norway) of the deep-sea sponge Phakellia ventilabrum are connected. The analysis comprised ddRADseq derived SNP datasets of 166 individuals collected from 57 sampling stations from 17 different areas, including two Marine Protected Areas, one Special Area of Conservation and other areas with different levels of protection. The 4,017 neutral SNPs used indicated high connectivity and panmixis amongst the majority of areas (Ireland to Norway), spanning ca. 2,500-km at depths of 99–900 m. This was likely due to the presence of strong ocean currents allowing long-distance larval transport, as supported by our migration analysis and by 3D particle tracking modelling. On the contrary, the Cantabrian Sea and Roscoff (France) samples, the southernmost areas in our study, appeared disconnected from the remaining areas, probably due to prevailing current circulation patterns and topographic features, which might be acting as barriers for gene flow. Despite this major genetic break, our results suggest that all protected areas studied are well-connected with each other. Interestingly, analysis of SNPs under selection replicated results obtained for neutral SNPs. The relatively low genetic diversity observed along the study area, though, highlights the potential fragility of this species to changing climates, which might compromise resilience to future threats.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 2
    Publication Date: 2024-02-07
    Description: In the deep ocean symbioses between microbes and invertebrates are emerging as key drivers of ecosystem health and services. We present a large-scale analysis of microbial diversity in deep-sea sponges (Porifera) from scales of sponge individuals to ocean basins, covering 52 locations, 1077 host individuals translating into 169 sponge species (including understudied glass sponges), and 469 reference samples, collected anew during 21 ship-based expeditions. We demonstrate the impacts of the sponge microbial abundance status, geographic distance, sponge phylogeny, and the physical-biogeochemical environment as drivers of microbiome composition, in descending order of relevance. Our study further discloses that fundamental concepts of sponge microbiology apply robustly to sponges from the deep-sea across distances of 〉10,000 km. Deep-sea sponge microbiomes are less complex, yet more heterogeneous, than their shallow-water counterparts. Our analysis underscores the uniqueness of each deep-sea sponge ground based on which we provide critical knowledge for conservation of these vulnerable ecosystems.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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  • 3
    Publication Date: 2024-02-07
    Description: Highlights: • Fan-shaped sponges display panmixia at three locations in the Cantabrian Sea. • Subtle sponge population genetic and pronounced microbial differences were observed between a canyon and bank (〈100km apart). • Lagrangian modelling reveals variable inter-annual connectivity via ocean currents between the sampling regions. • Interdisciplinary approaches can help to improve understanding about connectivity in the deep-sea. Abstract: Connectivity is a fundamental process driving the persistence of marine populations and their adaptation potential in response to environmental change. In this study, we analysed the population genetics of two morphologically highly similar deep-sea sponge clades (Phakellia hirondellei and the ‘Topsentia-and-Petromica’ clade, (hereafter referred to as ‘TaP clade’)) at three locations in the Cantabrian Sea and simultaneously assessed the corresponding host microbiome by 16S rRNA gene sequencing. A virtual particle tracking approach (Lagrangian modelling) was applied to assess oceanographic connectivity in the study area. We observed overall genetic uniformity for both sponge clades. Notably, subtle genetic differences were observed for sponges of the TaP clade and also their microbiomes between a canyon and bank location, 〈 100 km apart and with the same depth range. The Lagrangian model output suggests a strong retention of larvae in the study area with variable inter-annual connectivity via currents between the three sampling regions. We conclude that geologic features (canyons) and the prevailing ocean currents may dictate sponge holobiont connectivity and that differentiation can emerge even on small spatial scales.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
    Format: archive
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  • 4
    Publication Date: 2024-02-07
    Description: Highlights: • First time hybridization is detected in deep-water sponges (Phakellia) using SNPs. • Hybridization corroborated by morphological and microbial analyses. • Connectivity between shallow populations of Phakellia robusta spanning ca. 2,000 km. • Molecular connectivity explained by prevalent oceanographic currents. Abstract: Deep-sea North Atlantic sponge grounds are crucial components of the marine fauna providing a key role in ecosystem functioning. To properly develop effective conservation and management plans, it is crucial to understand the genetic diversity, molecular connectivity patterns and turnover at the population level of the species involved. Here we present the study of two congeneric sponges, Phakellia robusta and Phakellia hirondellei, using multiple sources of evidence. Our phylogenetic study using a fragment of COI placed these two species as sister. Haplotype network analysis using COI revealed no genetic structure for P. hirondellei in samples from the Cantabrian Sea (〈100 km). Contrastingly, P. robusta showed a clear genetic structure separating deep-water samples from the Cantabrian Sea and the Hatton-Rockall Basin, from samples from shallower waters from Kerry Head Reefs, NW of Orkney, and Norway. ddRADSeq-derived SNPs for P. robusta also segregated samples by bathymetry rather than by geographical distances, and detected a predominant northwards migration for shallow-water specimens connecting sites separated ca. 2,000 km, probably thanks to prevalent oceanographic currents. Importantly, our analysis using SNPs combining the datasets of the two species revealed the presence of potential hybrids, which was corroborated by morphological (spicule) and microbial (16S amplicon sequencing) analyses. Our data suggest that hybridization between these two species occurred at least two times in the past. We discuss the importance of using next-generation techniques to unveil hybridization and the implications of our results for conservation.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
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  • 5
    Publication Date: 2023-07-25
    Description: The original version of the Description of Additional Supplementary Files associated with this Article contained errors in the legends of Supplementary Data 5–8 and omitted legends for the Source Data. The HTML has been updated to include a corrected version of the Description of Additional Supplementary Files; the original incorrect version of this file can be found as Supplementary Information associated with this Correction.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
    Format: application/pdf
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  • 6
    Publication Date: 2022-09-14
    Description: In the deep ocean symbioses between microbes and invertebrates are emerging as key drivers of ecosystem health and services. We present a large-scale analysis of microbial diversity in deep-sea sponges (Porifera) from scales of sponge individuals to ocean basins, covering 52 locations, 1077 host individuals translating into 169 sponge species (including understudied glass sponges), and 469 reference samples, collected anew during 21 ship-based expeditions. We demonstrate the impacts of the sponge microbial abundance status, geographic distance, sponge phylogeny, and the physical-biogeochemical environment as drivers of microbiome composition, in descending order of relevance. Our study further discloses that fundamental concepts of sponge microbiology apply robustly to sponges from the deep-sea across distances of 〉10,000 km. Deep-sea sponge microbiomes are less complex, yet more heterogeneous, than their shallow-water counterparts. Our analysis underscores the uniqueness of each deep-sea sponge ground based on which we provide critical knowledge for conservation of these vulnerable ecosystems.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed , info:eu-repo/semantics/article
    Format: application/pdf
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  • 7
    Publication Date: 2023-03-10
    Keywords: 17; 21; 25; 3; 6; Angeles Alvarino; Area/locality; Bay of Biscay; Biological sample; BIOS; Campaign; Carter_St-25; Carvalho_St-17; Carvalho_St-21; Collection; Comment; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Depth, description; DEPTH, water; DR15; DR4; DR7; DR9; ECOMARG_0717; ECOMARG_0717_TF17; ECOMARG_0717_TF24; ECOMARG_0717_TF51; ECOMARG_0717_TF52; ECOMARG_0717_TF53; ECOMARG_0717_TF54; ECOMARG_0717_TF55; ECOMARG_0717_TV17; ECOMARG_2019; ECOMARG_2019_TF11; ECOMARG_2019_TF12; ECOMARG_2019_TF13; ECOMARG_2019_TF2; ECOMARG_2019_TF20; ECOMARG_2019_TF21; ECOMARG_2019_TF22; ECOMARG_2019_TF3; ECOMARG_2019_TF4; ECOMARG_2019_TF5; ESMAREC_0514; ESMAREC_0514_TF13; ESMAREC_0514_TF16; ESMAREC_0514_TF20; ESMAREC_0514_TF30; ESMAREC_0514_TF9; Habitat; INDEMARES_AV0511; INDERMARES_AV0511_DR7; Johnson; Latitude of event; Longitude of event; Name; Pisera_Vacelet; Pouliquen_St-3; Pouliquen_St-6; Ramon Margalef; South Atlantic Ocean; Species; SponGES; SponGES_0617; SponGES_0617_DR15; SponGES_0617_DR4; SponGES_0617_DR9; Station label; TF11; TF12; TF13; TF16; TF17; TF2; TF20; TF21; TF22; TF24; TF3; TF30; TF4; TF5; TF51; TF52; TF53; TF54; TF55; TF9; TV17; Type; Vizconde de Eza; Western Basin
    Type: Dataset
    Format: text/tab-separated-values, 215 data points
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  • 8
    Publication Date: 2023-02-24
    Description: We report the first records of the new species Tedania (Tedaniopsis) rappi (Demospongiae, Poecilosclerida, Tedaniidae) from the Orphan Seamount, between 2999.88 and 3449.629 m in depth.
    Keywords: Area/locality; Campaign; Code; Collection; Conductivity; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Depth, bottom/max; DEPTH, water; Device type; Discovery (2013); DY081; DY081_5; DY081_ROV327; Event label; Habitat; HUD2010-029; HUD2010-029_1340-3; Hudson; ICY-LAB; LATITUDE; LONGITUDE; Palancre; PAoM_1905_2183; Reference/source; Remote operated platform for oceanography; Remote operated vehicle; ROPOS; ROV; Salinity; San_Juan_Archipelago; Species; SponGES; Station label; Tartar_Strait; Temperature, water; Treatment; Type; Vessel
    Type: Dataset
    Format: text/tab-separated-values, 53 data points
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  • 9
    Publication Date: 2023-03-25
    Description: Connectivity is a fundamental process driving the persistence of marine populations and their adaptation potential in response to environmental change. In this study, we analysed the population genetics of two morphologically highly similar deep-sea sponge clades (Phakellia hirondellei and the 'Topsentia-and-Petromica (TaP)' clade) at three locations in the Cantabrian Sea. Sponge taxonomy was assessed by spicule analyses, as well as by 18S sequencing and COI sequencing. The corresponding host microbiome was analysed by 16S rRNA gene sequencing. In addition we set up an oceanographic modelling framework, for which we used seawater flow cytometry data (derived from bottom depths of CTD casts) as ground-truthing data.
    Keywords: Accession number, genetics; amplicon sequencing; Angeles Alvarino; Area/locality; Bacteria; Bay of Biscay; CTD/Rosette; CTD1; CTD10; CTD11; CTD12; CTD13; CTD14; CTD15; CTD2; CTD3; CTD4; CTD5; CTD6; CTD7; CTD8; CTD9; CTD-RO; Date/Time of event; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; DR10; DR15; DR4; DR7; DR9; Dredge, rock; DRG_R; Event label; flow cytometry; Flow cytometry; Geology, comment; Latitude of event; Longitude of event; Measurement conducted; Method/Device of event; Phytoplankton; population genetics; Porifera; Sample code/label; Sample ID; single-nucleotide polymorphisms (SNPs); SponGES; SponGES_0617; SPONGES_0617_04-DR4; SPONGES_0617_07-CTD1; SPONGES_0617_12-CTD2; SPONGES_0617_13-CTD3; SPONGES_0617_15-DR7; SPONGES_0617_18-CTD4; SPONGES_0617_19-CTD5; SPONGES_0617_23-DR9; SPONGES_0617_24-CTD6; SPONGES_0617_27-CTD7; SPONGES_0617_28-DR10; SPONGES_0617_29-CTD8; SPONGES_0617_40-CTD9; SPONGES_0617_42-CTD10; SPONGES_0617_46-CTD11; SPONGES_0617_49-CTD12; SPONGES_0617_55-CTD13; SPONGES_0617_58-CTD14; SPONGES_0617_60-DR15; SPONGES_0617_61-CTD15
    Type: Dataset
    Format: text/tab-separated-values, 550 data points
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  • 10
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    Unknown
    PANGAEA
    In:  Instituto Español de Oceanografía | Supplement to: Rios, Pilar; Cristobo, Javier (2018): Abyssocladia vaceleti (Porifera, Cladorhizidae): a new deep-sea carnivorous sponge from Patagonia. Zootaxa, 4466(1), 164, https://doi.org/10.11646/zootaxa.4466.1.13
    Publication Date: 2023-02-24
    Description: This study describes a new species of carnivorous sponge (Family Cladorhizidae) collected in Patagonia, SW Atlantic, off Argentinean waters and the North of the Falkland Islands (Malvinas). And data of species of Abyssocladia genus described to date.
    Keywords: Area/locality; Basis of event; Campaign; Collection; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Dredge; DRG; Event label; Habitat; Latitude of event; Longitude of event; Miguel Oliver; PAT0108; PAT0108_DR16; PAT1008; PAT1008_DR12; PAT1008_DR5; PAT1108; PAT1108_DR11; PAT1108_DR5; PAT1208; PAT1208_DR10; PAT1208_DR11; PAT1208_DR5; PAT1208_DR9; Patagonia_01/08; Patagonia_10/08; Patagonia_11/08; Patagonia_12/08; Reference/source; Sample ID; Species; SponGES; Station label; Type
    Type: Dataset
    Format: text/tab-separated-values, 82 data points
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