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  • 1
    Publication Date: 2020-08-05
    Description: Pteropods and heteropods are two distinct groups of holoplanktonic gastropods whose species and genetic diversity remain poorly understood, despite their ubiquity in the world’s oceans. Some species apparently attain near cosmopolitan distributions, implying long-distance dispersal or cryptic species assemblages. We present the first multi-regional and species-rich molecular dataset of holoplanktonic gastropods, comprising DNA barcodes from the mitochondrial cytochrome c oxidase I subunit gene (COI) from 115 individuals of 41 species sampled from six ocean regions across the globe. Molecular analysis and assessment of barcoding utility supported the validity of several morphological subspecies and forms (e.g. of Creseis virgula and Limacina helicina), while others were not supported (e.g. Cavolinia uncinata). Significant genetic variation was observed among conspecific specimens collected in different geographic regions for some species, particularly in euthecosomatous pteropods. Several species of euthecosomes showed no evidence of genetic separation among distant ocean regions. Overall, we suggest some taxonomic revision of the holoplanktonic gastropods will be required, pending a more complete molecular inventory of these groups.
    Type: Article , PeerReviewed
    Format: text
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  • 2
    Publication Date: 2021-06-19
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 3
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    In:  EPIC3International Ocean Research Conference (IORC), 2014-11-17-2014-11-21
    Publication Date: 2014-11-24
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
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  • 4
    Publication Date: 2019-07-17
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
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  • 5
    Publication Date: 2014-07-02
    Description: More than 2,500 species of copepods (Class Maxillopoda; Subclass Copepoda) occur in the marine planktonic environment. The exceptional morphological conservation of the group, with numerous sibling species groups, makes the identification of species challenging, even for expert taxonomists. Molecular approaches to species identification have allowed rapid detection, discrimination, and identification of species based on DNA sequencing of single specimens and environmental samples. Despite the recent development of diverse genetic and genomic markers, the barcode region of the mitochondrial cytochrome c oxidase subunit I (COI) gene remains a useful and – in some cases – unequaled diagnostic character for species-level identification of copepods. This study reports 800 new barcode sequences for 63 copepod species not included in any previous study and examines the reliability and resolution of diverse statistical approaches to species identification based upon a dataset of 1,381 barcode sequences for 195 copepod species. We explore the impact of missing data (i.e., species not represented in the barcode database) on the accuracy and reliability of species identifications. Among the tested approaches, the best close match analysis resulted in accurate identification of all individuals to species, with no errors (false positives), and out-performed automated tree-based or BLAST based analyses. This comparative analysis yields new understanding of the strengths and weaknesses of DNA barcoding and confirms the value of DNA barcodes for species identification of copepods, including both individual specimens and bulk samples. Continued integrative morphological-molecular taxonomic analysis is needed to produce a taxonomically-comprehensive database of barcode sequences for all species of marine copepods.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 6
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here for personal use, not for redistribution. The definitive version was published in Continental Shelf Research 111 (2015): 83-94, doi:10.1016/j.csr.2015.11.001.
    Description: The cryptic copepod species, Pseudocalanus moultoni and P. newmani, co-occur on Georges Bank and in the Gulf of Maine (Northwest Atlantic); even recent studies have reported results and conclusions based on examination of the combined species. Species-specific PCR (SS-PCR) based on mitochondrial cytochrome oxidase I (COI) sequence divergence was used in this study to discriminate the species. Species-specific descriptions of habitat usage and predicted patterns of transport and retention on Georges Bank were made by mapping distributions and calculating abundances of each species from January to June, 1999 for four vertical strata (0-15 m, 15-40 m, 40-100 m, and 0-100 m) and five regions (Northern Flank, Bank Crest, Northeast Peak, Southern Flank, and Slope Water) identified on the basis of bathymetry and circulation. Patterns of distribution and abundance for the two species during January to June, 1999 were largely consistent with those described based on vertically integrating mapping and analysis for the same period in 1997 by McGillicuddy and Bucklin (2002). The region-specific and depth-stratified analyses allowed further discrimination in habitat usage by the species and confirmed the distinctive patterns for the two species. The observed differences between the species in abundances among the five regions and three depth strata over Georges Bank impact their transport trajectories. The concentration of P. moultoni in deep layers likely explains the higher rates of retention and lower rates of advective loss of this species from the Bank, compared to P. newmani, which may be more subject to wind-driven transport in the surface layer. Accurate identification and discrimination of even closely-related and cryptic species is needed to ensure full understanding and realistic predictions of changes in diversity of zooplankton and the functioning of pelagic ecosystems.
    Description: Funding was provided by the National Science Foundation as part of the U.S. GLOBEC Program (Award Nos. OCE-9529100 and OCE-9632840 to Ann Bucklin; Award No. OCE-0815047 to Dennis McGillicuddy).
    Keywords: Zooplankton ; Georges Bank ; Cryptic species ; COI ; Pseudocalanus
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
    Format: application/pdf
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  • 7
    Publication Date: 2022-12-21
    Description: Dataset: eventlogs
    Description: Event logs from the U.S. GLOBEC Georges Bank project, from 10 vessels and 104 cruises in the Gulf of Maine and Georges Bank area from 1994-1999. Event logs provide an overall summary of the sampling activities during a cruise. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/2321
    Description: National Science Foundation (NSF) unknown GB NSF, National Oceanic and Atmospheric Administration (NOAA) unknown GB NOAA
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 8
    Publication Date: 2022-10-31
    Description: Dataset: Salp sample log
    Description: This dataset is a sample log of the Salpa thompsoni specimens used for genomic and transcriptomic analysis. Collections were from three cruises in the Southern Ocean. Collections were made in Summer of 2009 during a cruise of the Umitaka-Maru (UM-08-09) from off-shelf sites in the Indian Sector. During cruises of the ARSV Laurence M. Gould (LMG-1110) and R/V Polarstern (ANT-XXVII-2) samples were collected from on- and off-shelf regions of the Western Antarctic Peninsula Region and in Bransfield Strait during Spring and Summer 2011, respectively. Reported parameters include cruise id, region, season and area, location, number of samples collected, temperature, salinity, sampled depth range, and the depth of the water at the collection site. For a complete list of measurements, refer to the supplemental document 'Field_names.pdf', and a full dataset description is included in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: http://www.bco-dmo.org/dataset/672600
    Description: NSF Antarctic Sciences (NSF ANT) ANT-1044982
    Keywords: Salpa thompsoni ; Environmental transcriptomics ; RNAseq ; Genome sequence ; Thaliacea ; MiRNA
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 9
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: CTD_MOCNESS1
    Description: CTD data from MOCNESS-1m tows in the Southern Ocean around the South Shetland Islands and Palmer Archipelago, Western Antarctic Peninsula in November 2011. For a complete list of measurements, refer to the supplemental document 'Field_names.pdf', and a full dataset description is included in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: http://www.bco-dmo.org/dataset/488871
    Description: NSF Antarctic Sciences (NSF ANT) ANT-1044982
    Keywords: Southern Ocean ; CTD ; MOCNESS ; Zooplankton
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 10
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: CTD data from LMG1110
    Description: Hydrographic data from 20 CTD casts in the Southern Ocean around the South Shetland Islands and Palmer Archipelago, Western Antarctic Peninsula in November 2011. For a complete list of measurements, refer to the supplemental document 'Field_names.pdf', and a full dataset description is included in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: http://www.bco-dmo.org/dataset/559174
    Description: NSF Antarctic Sciences (NSF ANT) ANT-1044982
    Keywords: CTD ; Temperature ; Conductivity ; Depth ; Southern Ocean
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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