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  • 1
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature 450 (2007), S. 487-488 
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] The gut of wood-feeding termites is a tiny but astonishingly efficient bioreactor, in which microbes catalyse the conversion of lignified plant cell walls to fermentation products that drive the metabolism of their host. Molecular phylogenetic data have revealed the presence of hundreds of ...
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  • 2
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology letters 84 (1991), S. 0 
    ISSN: 1574-6968
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Abstract A gram-negative nitrate-reducing bacterium, strain Asl-3, was isolated from activated sludge with nitrate and 3-hydroxybenzoate as sole source of carbon and energy. The new isolate was faculaatively anaerobic, catalase- and oxidase-positive and polarly monotrichously flagellated. In addition to nitrate, nitrite, N2O, and O2 served as electron acceptors. Growth with 3-hydroxybenzoate and nitrate was biphasic: nitrate was completely reduced to nitrite before nitrite reduction to N2 started. Benzoate, 3-hydroxybenzoate, 4-hydroxybenzoate, protocatechuate or phenyl-acetate served as electron and carbon source under aerobic and anaerobic conditions. During growth with excess carbon source, poly-β-hydroxybutyrate was formed. These characteristics allow the affiliation of strain Asl-3 with the family Pseudomonadaceae. Analogous to the pathway of 4-hydroxybenzoate degradation in other bacteria, the initial step in anaerobic 3-hydroxybenzoate degradation by this organism was activation to 3-hydroxy-benzoyl-CoA in an ATP-consuming reaction. Cell extracts of 3-hydroxybenzoate-grown cells exhibited 3-hydroxybenzoyl-CoA synthetase activity of 190 nmol min−1 mg protein−1 as well as benzoyl-CoA synthetase activity of 86 nmol min−1 mg protein−1. A reductive dehydroxylation of 3-hydroxybenzoyl-CoA could not be demonstrated due to rapid hydrolysis of chemically synthesized 3-hydroxybenzoyl-CoA by cell extracts.
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  • 3
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology reviews 24 (2000), S. 0 
    ISSN: 1574-6976
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Molecular oxygen is one of the most important reactants in biogeochemical cycles. Due to its low solubility in water, the consumption of oxygen leads to the development of oxic–anoxic interfaces, which separate aerobic from anaerobic processes in virtually all environments, ranging in scale from oceanic sediments to the fecal pellets of a small soil invertebrate. Three case studies were selected to illustrate the basic situation and the specific characteristics of oxic–anoxic interfaces: sediments, the rhizosphere of aquatic plants, and the intestinal tract of insects. Each system is governed by the same general principles, but striking differences arise from, e.g., the nature of the major microbial activities and the mechanisms controlling metabolite fluxes. Also scale and dimensional differences as well as the consequences of temporal fluctuations are of fundamental importance. Recent developments in microbial ecology, which often combine traditional and modern approaches, have significantly furthered our understanding of the specific microniches and the metabolic and behavioral adaptations of microorganisms to life at the oxic–anoxic interface. New concepts help to define the targets of future studies: the spatial organization of microbial populations, their microenvironments and in situ activities, and the functional interactions within structured microbial communities.
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  • 4
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Physiologia plantarum 101 (1997), S. 0 
    ISSN: 1399-3054
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Citrus fruits accumulate high levels of sucrose and hexoses, although most photoas-similates arrive in the form of sucrose. In sweet limes, faster rates of sugar accumulation take place early in development when sucrose catabolic enzymes are most active. The present investigation was aimed at providing information on the mechanisms of sucrose (and hexose) uptake into the vacuole of cells containing high levels of sucrose hydrolytic activity. Tonoplast vesicles of high purity were isolated in a discontinuous sucrose gradient. The vesicles were capable of forming a pH gradient in the presence of ATP. Both bafilomycin and NO3− (but not vanadate) inhibited ATP hydrolysis and prevented the formation of the pH gradient, confirming the tonoplast origin. Energized vesicles (either by addition of ATP or by artificial pH gradient) did not accumulate sucrose or hexoses against a concentration gradient. In the presence of either sucrose or hexoses, the established ΔpH; was not disrupted as was the case with tonoplast vesicles from red beet hypocotyl. Therefore, a sucrose/H+ (hexose) antiport may not be the mechanism of sucrose and hexose transport into the vacuoles of sweet lime juice cells. The data indicated that sucrose uptake into vacuoles of sweet lime occurs by facilitated diffusion. Hexoses originate from the hydrolytic action of acid invertase on sucrose within the vacuole, and by the action of cytosolic sucrose synthase.
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  • 5
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 47 (2004), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The biological and chemical potential for electron shuttling via humic acids was evaluated by analyzing the depth distribution of humic-acid-reducing and iron-reducing bacteria in a freshwater sediment, and correlating it to the redox characteristics of humic acids and iron. Physicochemical analysis of profundal sediments of Lake Constance revealed a distinct stratification, with oxygen respiration, microbial iron and sulfate reduction, and methanogenesis allocatable to defined layers. Among the acid-extractable iron in the surface layer, ferric iron (Fe(III)) was dominant, whereas ferrous iron (Fe(II)) prevailed below 2 cm depth. Humic acids showed a higher electron-accepting (oxidizing) capacity in the surface layer and a higher reducing capacity in deeper layers. The more reduced redox state of humic acids in deeper layers was probably due to reduction by humic-acid-reducing microorganisms. Most-probable-number analysis revealed that the sediments contained populations of humic-acid-reducing bacteria that (i) were substantially larger than those of the iron-reducing bacteria in the respective sediment layers and (ii) were in the same range as those of the fermenting bacteria. Our results suggest that microbial reduction of humic acids and subsequent chemical reduction of poorly soluble iron(III) minerals by the reduced humic acids represents an important path of electron flow in anoxic natural environments such as freshwater sediments.
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  • 6
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: We previously demonstrated a potentially deep penetration of oxygen into the hindgut lumen of wood-feeding termites, high oxygen consumption rates of the symbiotic gut microbiota, and an indispensable role of oxygen in the mineralization of aromatic compounds. Here we characterize the gut microflora of the wood-feeding termite Reticulitermes flavipes, focusing on metabolic capacities and relation to oxygen of the most prevalent physiotypes. The carbohydrate-utilizing isolates, enumerated on liquid and solid growth media (3.1×105 cells per gut; gut liquid volume ∼0.3 μl), consisted of aerotolerant lactic acid bacteria (58%) and surprisingly large numbers of facultatively aerobic (20%) and even strictly aerobic bacteria (22%). The second largest group of cultivable gut bacteria were hydrogen-oxidizing methanogens (3.0×105 cells per gut), which were cultivated only on liquid media. Together, these two groups represented 10% of the total microscopic counts obtained by DAPI staining. The large number of lactic acid bacteria agreed with the metabolic product profiles in anoxic serial dilutions of gut homogenates in which lactate was the main product from glucose in the highest dilutions. Other physiological groups, e.g. propionate and butyrate producers, were much less abundant. Lactate was not, however, a major metabolite in the hindgut fluid, a phenomenon hitherto explained by a rapid turnover of lactate by other gut bacteria. In view of the relatively small number of lactate-oxidizing and lactate-fermenting bacteria, this explanation is not sufficient. We show that the isolate Enterococcus strain RfL6, representing the most abundant physiotype among the carbohydrate-utilizing gut bacteria, was not purely fermentative, but consumed oxygen during growth on glucose, accompanied by a complete shift in the product spectrum from lactate to acetate, and was able to oxidize lactate to acetate when oxygen was present. This agrees with the observation that acetate is the major product of the hindgut metabolism of R. flavipes (∼70 mM in the hindgut fluid). Together with previous findings, these results underline the obvious but so far neglected importance of oxygen and contribute to the emerging concept that the termite hindguts are far from simple, anoxic fermenters, but axially and radially structured, heterogeneous systems characterized by steep gradients of metabolites.
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  • 7
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 45 (2003), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: The underground plant parts of reed (Phragmites australis) growing in anoxic soil of the littoral zone of lakes are provided with oxygen via an aerenchyma. Some of this oxygen is released into the rhizosphere, which creates a potential microhabitat for aerobic fungi. Although fungal endophytes of reed have been shown to occur also in roots of flooded habitats, it is not known whether or how fungi can infect roots growing in anoxic or hypoxic soil. To study fungal infection of reed roots in the laboratory, we developed an incubation chamber to expose reed roots to conidia of Microdochium bolleyi in an anoxic agar medium and to observe fungal infection in vivo. Germination rates of conidia were high close to living roots, but decreased to zero in anoxic areas of the chamber. Conidial germ tubes located up to 200 μm from the roots grew preferentially towards the living roots. Conidia also germinated close to air-filled Teflon tubes and exhibited germ-tube tropism, but not as distinctly as on living reed roots. Conidia did not germinate in the neighbourhood of dead roots in anoxic agar. However, in the aerated margin of the incubation chamber most conidia germinated and exhibited tropic growth towards dead roots. Penetration of M. bolleyi through several cell layers of living roots was observed in cryo-microtome sections. Penetration was significantly deeper with illuminated plants than with plants kept in the dark; in some cases even the stele was reached. This is the first observation of oxygen released from roots to support growth of an aerobic fungus and of fungal penetration into root tissue in an anoxic environment.
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  • 8
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 37 (2001), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Profundal sediments of Lake Constance were sampled at 60–130 m water depth and studied with respect to the population sizes and depth distribution of mixotrophic and lithotrophic iron-oxidizing, denitrifying bacteria. The sediment cores showed a distinct stratification with oxygen and nitrate being consumed within the first centimeter of the sediment. The sediment contained large amounts of acid-extractable iron (0.8–1.4% of the dry mass). The proportion of ferrous iron in the solid phase increased dramatically from 16–35% in the oxidized surface layer to 79–97% below 4-cm depth, whereas the total iron content increased only slightly with depth. The concentration of dissolved ferrous iron in the pore water ranged between 10 and 80 μM, which was about three orders of magnitude lower than the total iron content of the solid phase. The redox profile of the pore water iron followed that of the solid phase. Most probable numbers (MPNs) of acetate-oxidizing, denitrifying bacteria in the different cores ranged from 1.0×106 to 2.1×108 cells (ml sediment)−1; highest numbers were found in the upper sediment layer. In most cores, bacteria capable of iron oxidation made up a significant part (1–58%) of the total cultivable denitrifying population. Between 1.0×104 and 5.8×105 cells ml−1 oxidized iron mixotrophically; the numbers of lithotrophic iron-oxidizing denitrifiers were about one order of magnitude lower. MPNs of mixotrophic iron oxidizers and aerobic iron oxidizers among the denitrifying populations in the upper sediment layers were in the same range. Generally, the MPNs of the different iron-oxidizing populations did not change significantly with depth.
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  • 9
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 47 (2004), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Most widely used medium for cultivation of methanotrophic bacteria from various environments is that proposed in 1970 by Whittenbury. In order to adapt and optimize medium for culturing of methanotrophs from freshwater sediment, media with varying concentrations of substrates, phosphate, nitrate, and other mineral salts were used to enumerate methanotrophs by the most probable number method. High concentrations (〉1 mM) of magnesium and sulfate, and high concentrations of nitrate (〉500 μM) significantly reduced the number of cultured methanotrophs, whereas phosphate in the range of 15–1500 μM had no influence. Also oxygen and carbon dioxide influenced the culturing efficiency, with an optimal mixing ratio of 17% O2 and 3% CO2; the mixing ratio of methane (6–32%) had no effect. A clone library of pmoA genes amplified by PCR from DNA extracted from sediment revealed the presence of both type I and type II methanotrophs. Nonetheless, the cultivation of methanotrophs, also with the improved medium, clearly favored growth of type II methanotrophs of the Methylosinus/Methylocystis group. Although significantly more methanotrophs could be cultured with the modified medium, their diversity did not mirror the diversity of methanotrophs in the sediment sample detected by molecular biology method.
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  • 10
    ISSN: 1432-072X
    Keywords: Trihydroxygenzenes ; Anabolism ; Anaerobic citric acid cycle ; Succinyl-CoA: acetoacetate CoA transferase ; Phylogeny ; Gram-negative bacteria
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract Pelobacter acidigallici is a strictly anaerobic bacterium that ferments trihydroxybenzenes to 3 mol acetate/mol substrate. The key intermediate linking the catabolic sequences to the formation of cell matter is acetyl-CoA. Since P. acidigallici is independent of further external electron donors, it must oxidize part of the acetyl-CoA to provide reducing equivalents for anabolism. In this study we demonstrate the presence of all enzymes necessary to operate a modified citric acid cycle, with activities sufficient to support growth. Unusual enzymes in the cycle are 2-oxoglutarate synthase and succinyl-CoA: acetoacetate CoA transferase. Anaplerotic reactions are catalyzed by pyruvate synthase, PEP synthetase and PEP carboxylase. No CO dehydrogenase, hydrogenase, or formate dehydrogenase activity could be detected. The phylogenetic implications of these findings with respect to the relatedness of P. acidigallici to gramnegative, sulfur-reducing bacteria by 16 S rRNA cataloguing are discussed.
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