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  • 1
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    Unknown
    PANGAEA
    In:  Supplement to: Wessels, Wiebke; Sprungala, Susanne; Watson, Sue-Ann; Miller, David J; Bourne, David G (2017): The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress. FEMS Microbiology Ecology, 93(5), https://doi.org/10.1093/femsec/fix013
    Publication Date: 2024-03-15
    Description: Bacteria associated with marine invertebrates are thought to have a range of important roles that benefit the host including production of compounds that may exclude pathogenic microorganisms and recycling of essential nutrients. This study characterised the microbiome of a gonochoric octocoral, Lobophytum pauciflorum, and investigated whether either sex or environmental stresses influenced the diversity of the associated microbiome through amplicon profiling of the bacterial 16S rRNA gene. Sequences affiliated to Spirochaetaceae and Endozoicimonaceae dominated the microbiome of L. pauciflorum, representing 43% and 21% of the community, respectively. Among the dominant class affiliations, no sex-specific differences were detected, though unassigned sequences were at a 2-fold higher relative abundance in samples from female individuals than from males. These potentially novel sequences contributed to observed differences between sexes as detected by a multivariate analysis at the OTU level. Exposing L. pauciflorum fragments to increased temperature (31°C), decreased pH (7.9) or both stressors simultaneously for 12 days did not significantly alter the microbial community, indicating that the soft coral microbiome is relatively resilient to short-term environmental stress.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Alpha diversity; Alpha diversity, standard deviation; Animalia; Aragonite saturation state; Benthic animals; Benthos; Bicarbonate ion; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Class; Cnidaria; Coast and continental shelf; Community composition and diversity; Containers and aquaria (20-1000 L or 〈 1 m**2); EXP; Experiment; Experiment duration; Family; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Laboratory experiment; Lobophytum pauciflorum; OA-ICC; Ocean Acidification International Coordination Centre; Operational taxonomic unit; Operational taxonomic unit, standard deviation; Orpheus_Pelorus_Island; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Registration number of species; Salinity; Salinity, standard deviation; Sequence abundance; Sequence abundance, standard error; Shannon Diversity Index; Shannon Diversity Index, standard deviation; Simpson index of diversity; Simpson index of diversity, standard deviation; Single species; South Pacific; Species; Temperature; Temperature, water; Temperature, water, standard deviation; Treatment; Tropical; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 1036 data points
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  • 2
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in The ISME Journal 11 (2017): 186–200, doi:10.1038/ismej.2016.95.
    Description: Reef-building corals are well regarded not only for their obligate association with endosymbiotic algae, but also with prokaryotic symbionts, the specificity of which remains elusive. To identify the central microbial symbionts of corals, their specificity across species and conservation over geographic regions, we sequenced partial SSU ribosomal RNA genes of Bacteria and Archaea from the common corals Stylophora pistillata and Pocillopora verrucosa across 28 reefs within seven major geographical regions. We demonstrate that both corals harbor Endozoicomonas bacteria as their prevalent symbiont. Importantly, catalyzed reporter deposition–fluorescence in situ hybridization (CARD–FISH) with Endozoicomonas-specific probes confirmed their residence as large aggregations deep within coral tissues. Using fine-scale genotyping techniques and single-cell genomics, we demonstrate that P. verrucosa harbors the same Endozoicomonas, whereas S. pistillata associates with geographically distinct genotypes. This specificity may be shaped by the different reproductive strategies of the hosts, potentially uncovering a pattern of symbiont selection that is linked to life history. Spawning corals such as P. verrucosa acquire prokaryotes from the environment. In contrast, brooding corals such as S. pistillata release symbiont-packed planula larvae, which may explain a strong regional signature in their microbiome. Our work contributes to the factors underlying microbiome specificity and adds detail to coral holobiont functioning.
    Description: This research was supported by a KAUST-WHOI Post-doctoral Partnership Award to MN and a KAUST-WHOI Special Academic Partnership Funding Reserve Award to CRV and AA. Research in this study was further supported by baseline research funds to CRV by KAUST and NSF award OCE-1233612 to AA. RR was supported by the ct-PIRE Project, Robert Lemelson Fellowship, Graduate Research Award (UCLA), Women Divers Hall of Fame—Sister Fund Conservation Award and a Betty and E. P. Franklin Grant in Tropical Biology and Conservation.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Publication Date: 2022-07-22
    Description: Most benthic invertebrates, including ecosystem engineers such as corals, sponges and bivalves, have a motile planktonic larval phase and rely on specific chemical cues to identify a suitable substrate to settle. Crustose coralline algae (CCA) can induce settlement and metamorphosis responses in many invertebrates including corals. We tested the respective coral settlement capacity of multiple CCA species in a choice experiment and investigated the composition of their microbiomes. Our findings revealed that coral larval settlement was drastically influenced by CCA genera and also suggest that bacterial communities on the CCA surface can potentially serve as a driver of coral larval settlement. The composition of the bacterial communities on the surface of the least attractive CCA genus, Neogoniolithon fosliei, was markedly different from the other genera, Porolithon gardineri and Titanoderma prototypum and was significantly enriched in Vibrio and Flammeovirgaceae. The activity of CCA-associated bacterial communities may contribute to some of the variability observed in settlement responses between CCA species. Specific bacterial ASVs assigned to the Neptuniibacter, Methylotrophic Group 3 and Cellvibrionaceae were positively correlated with coral settlement. Conversely, ASVs assigned as Vibrio and Flammeovirga were negatively correlated with coral settlement. This study identifies putative bacterial taxa involved in coral settlement, which is an essential step to understand the chemical cues involved in this process and to predict the ability of corals to recolonize damaged reefs following disturbances.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 4
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Barton, J. A., Hutson, K. S., Bourne, D. G., Humphrey, C., Dybala, C., & Rawlinson, K. A. The life cycle of the Acropora coral-eating flatworm (AEFW), Prosthiostomum acroporae; the influence of temperature and management guidelines. Frontiers in Marine Science, 6, (2019): 524, doi: 10.3389/fmars.2019.00524.
    Description: As coral aquaculture is increasing around the world for reef restoration and trade, mitigating the impact of coral predators, pathogens and parasites is necessary for optimal growth. The Acropora coral-eating flatworm (AEFW), Prosthiostomum acroporae (Platyhelminthes: Polycladida: Prosthiostomidae) feeds on wild and cultivated Acropora species and its inadvertent introduction into reef tanks can lead to the rapid death of coral colonies. To guide the treatment of infested corals we investigated the flatworm’s life cycle parameters at a range of temperatures that represent those found in reef tanks, coral aquaculture facilities and seasonal fluctuations in the wild. We utilized P. acroporae from a long-term in vivo culture on Acropora species to examine the effects of temperature (3°C increments from 21 to 30°C) on flatworm embryonation period, hatching success, hatchling longevity, and time to sexual maturity. Our findings show that warmer seawater shortened generation times; at 27°C it took, on average, 11 days for eggs to hatch, and 35 days for flatworms to reach sexual maturity, giving a minimum generation time of 38 days, whereas at 24°C the generation time was 64 days. Warmer seawater (24–30°C) also increased egg hatching success compared to cooler conditions (21°C). These results indicate that warmer temperatures lead to higher population densities of P. acroporae. Temperature significantly increased the growth rate of P. acroporae, with individuals reaching a larger size at sexual maturity in warmer temperatures, but it did not influence hatchling longevity. Hatchlings, which can swim as well as crawl, can survive between 0.25 and 9 days in the absence of Acropora, and could therefore disperse between coral colonies and inter-connected aquaria. We used our data to predict embryonation duration and time to sexual maturity at 21–30°C, and discuss how to optimize current treatments to disrupt the flatworm’s life cycle in captivity.
    Description: This study was funded by a James Cook University Development Grant, “Parasite cultivation techniques: in vitro and in vivo culture methods for ecological and applied aquatic parasitology research” awarded to KH. Additional funding to KR and CD was raised through crowdfunding on Experiment.com (https://doi.org/10.18258/1621) and a donation from the Atlanta Reef Club, Duluth, GA, United States.
    Keywords: AEFW ; Acropora ; flatworms ; reef restoration ; coral aquaculture ; pest management
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 31 (2000), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Oligonucleotide probes targeting the 16S rRNA of distinct phylogenetic groups of methanotrophs were designed for the in situ detection of these organisms. A probe, MG-64, detected specifically type I methanotrophs, while probes MA-221 and MA-621, detected type II methanotrophs in whole cell hybridisations. A probe Mc1029 was also designed which targeted only organisms from the Methylococcus genus after whole cell hybridisations. All probes were labelled with the fluorochrome Cy3 and optimum conditions for hybridisation were determined. Non-specific target sites of the type I (MG-64) and type II (MA-621) probes to non-methanotrophic organisms are highlighted. The probes are however used in studying enrichment cultures and environments where selective pressure favours the growth of methanotrophs over other organisms. The application of these probes was demonstrated in the detection of type I methanotrophs with the MG-64 probe in an enrichment culture from an estuarine sample demonstrating methane oxidation. The detection of type I methanotrophs was confirmed by a 16S rDNA molecular analysis of the estuarine enrichment culture which demonstrated that the most abundant bacterial clone type in the 16S rDNA library was most closely related to Methylobacter sp. strain BB5.1, a type I methanotroph also isolated from an estuarine environment.
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    FEMS microbiology ecology 27 (1998), S. 0 
    ISSN: 1574-6941
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology
    Notes: Methanotrophs are a fascinating group of bacteria that have the unique ability to grow on methane as their sole carbon and energy source. They appear to be widespread in nature and have been isolated from a number of different environments, including soils, sediments, freshwater, marine sediments, seawater, acid peat bogs, hot springs and cold environments such as the Antarctic. There are now eight recognised genera of methanotrophs. Methanotrophs have attracted a great deal of interest over the past 30 years since they have considerable potential for the production of bulk chemicals, fine chemicals and in bioremediation processes, such as the degradation of the groundwater pollutant trichloroethylene. More recently, they are being extensively studied in a wide variety of environments since methanotrophs play a critical role in the global methane cycle. Polymerase chain reaction-based methods have been used to study the ecology and diversity of methanotrophs. We review here molecular ecology methods that are already available or which are currently being developed for methanotrophs. These are based on 16S ribosomal RNA technology and specific amplification of ‘functional genes’, such as those encoding unique enzymes in the metabolism of these organisms including methane monooxygenase and methanol dehydrogenase.
    Type of Medium: Electronic Resource
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  • 7
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    Unknown
    Nature Publishing Group
    In:  The ISME Journal, 6 (8). pp. 1526-1534.
    Publication Date: 2016-04-29
    Description: The microenvironmental dynamics of the microbial mat of black band disease (BBD) and its less virulent precursor, cyanobacterial patch (CP), were extensively profiled using microsensors under different light intensities with respect to O(2), pH and H(2)S. BBD mats exhibited vertical stratification into an upper phototrophic and lower anoxic and sulphidic zone. At the progression front of BBD lesions, high sulphide levels up to 4977 μM were measured in darkness along with lower than ambient levels of pH (7.43±0.20). At the base of the coral-BBD microbial mat, conditions were hypoxic or anoxic depending on light intensity exposure. In contrast, CP mats did not exhibit strong microchemical stratification with mostly supersaturated oxygen conditions throughout the mats at all light intensities and with levels of pH generally higher than in BBD. Two of three replicate CP mats were devoid of sulphide, while the third replicate showed only low levels of sulphide (up to 42 μM) present in darkness and at intermediate light levels. The level of oxygenation and sulphide correlated well with lesion migration rates, that is virulence of the mats, which were greater in BBD than in CP. The results suggest that biogeochemical microgradients of BBD shaped by the complex microbial community, rather than a defined pathogen, are the major trigger for high virulence and the associated derived coral mortality of this disease.
    Type: Article , PeerReviewed
    Format: text
    Format: image
    Format: text
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