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  • 1
    Publication Date: 2014-10-16
    Description: During the June 2010 survey of phytoplankton and physicochemical parameters in the Krka River estuary (eastern Adriatic Sea), a cryptophyte bloom was observed. High abundance of cryptophytes (maximum 7.9×10 6 cells l –1 ) and high concentrations of the class-specific biomarker pigment alloxanthine (maximum 2312 ng l –1 ) were detected in the surface layer and at the halocline in the lower reach of the estuary. Taxonomical analysis revealed that the blooming species was Plagioselmis cf. prolonga . Analysis of the environmental parameters in the estuary suggested that the bloom was supported by the slower river flow as well as the increased orthophosphate and ammonium concentrations. The first record of a cryptophyte bloom in the Krka River estuary may indicate that large-scale changes are taking place in the phytoplankton community. Such changes could have a major impact on the natural ecosystem dynamics and the mariculture production in the area.
    Print ISSN: 0214-8358
    Electronic ISSN: 1886-8134
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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  • 2
    Publication Date: 2023-01-30
    Description: The biogeochemical impact of coccolithophores is defined by their overall abundance in the oceans, but also by a wide range in physiological traits such as cell size, degree of calcification and carbon production rates between different species. Species' "sensitivity" to environmental forcing has been suggested to relate to their cellular PIC:POC ratio and other physiological constraints. Understanding both the short and longer-term adaptive strategies of different coccolithophore lineages, and how these in turn shape the biogeochemical role of the group, is therefore crucial for modeling the ongoing changes in the global carbon cycle. Here we present data on the phenotypic evolution of a large and heavily-calcified genus Helicosphaera (order Zygodiscales) over the past 15 million years (Ma), at two deep-sea drill sites from the tropical Indian Ocean and temperate South Atlantic. The modern species Helicosphaera carteri, which displays eco-physiological adaptations in modern strains, was used to benchmark the use of its coccolith morphology as a physiological proxy in the fossil record. Our results show that, on the single-genotype level, coccolith morphology has no correlation with growth rates, cell size or PIC and POC production rates in H. carteri. However, significant correlations of coccolith morphometric parameters with cell size and physiological rates do emerge once multiple genotypes or closely related lineages are pooled together. Using this insight, we interpret the phenotypic evolution in Helicosphaera as a global, resource limitation-driven selection for smaller cells, which appears to be a common adaptive trait among different coccolithophore lineages, from the warm and high-CO2 world of the middle Miocene to the cooler and low-CO2 conditions of the Pleistocene. However, despite a significant decrease in mean coccolith and cell size, Helicosphaera kept relatively stable PIC:POC (as inferred from the coccolith "aspect ratio") and thus highly conservative biogeochemical output on the cellular level. We argue that this supports its status as an "obligate calcifier", like other large and heavily-calcified genera such as Calcidiscus and Coccolithus, and that other adaptive strategies, beyond size-adaptation, must support the persistent, albeit less abundant, occurrence of these taxa. This is in stark contrast with the ancestral lineage of Emiliania and Gephyrocapsa, which not only decreased in mean size but also displayed much higher phenotypic plasticity in degree of calcification while becoming globally more dominant in plankton communities.
    Keywords: biogeochemistry; coccolith; Morphometry; nannofossils; phenotypic evolution
    Type: Dataset
    Format: application/zip, 4 datasets
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  • 3
    Publication Date: 2023-06-27
    Description: This dataset contains raw coccolith size data and calculated parameters (Coccolith volume index and Aspect ratio) of the genus Helicosphaera at DSDP Site 525 during the past 15 million years. Data was collected using the optical method described in Beaufort et al., 2014 (doi:10.1038/nprot.2014.028). Each measured coccolith is identified to the morphospecies-level.
    Keywords: 74-525; AGE; biogeochemistry; coccolith; Coccoliths, area; Coccoliths, aspect ratio; Coccoliths, diameter; Coccoliths, grey level; Coccoliths, thickness; Coccoliths, volume; Deep Sea Drilling Project; DRILL; Drilling/drill rig; DSDP; Glomar Challenger; Leg74; Morphometry; nannofossils; Natural logarithm; phenotypic evolution; Sample ID; South Atlantic/CREST; Species
    Type: Dataset
    Format: text/tab-separated-values, 29505 data points
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  • 4
    Publication Date: 2023-09-11
    Description: This dataset contains calcareous nannofossil flux data at DSDP Site 525 during the past 15 million years. Samples were prepared using the drop technique (Bordiga et al., 2015; doi:10.1016/j.revmic.2015.05.002) and nannofossil abundance was determined under the polarized-light microscope. Fluxes were calculated from the absolute abundances and the site-specific mass accumulation rates (data from Suchéras-Marx and Henderiks (2014; doi:10.1016/j.gloplacha.2014.10.015)) with reproducibility of ±15%.
    Keywords: 74-525A; 74-525B; AGE; biogeochemistry; Calcidiscaceae, flux per year; Calculated; coccolith; Coccolithaceae, flux per year; Deep Sea Drilling Project; DEPTH, sediment/rock; Discoaster spp., flux per year; DRILL; Drilling/drill rig; DSDP; DSDP/ODP/IODP sample designation; Event label; Florisphaera profunda, flux per year; Glomar Challenger; Helicosphaera spp., flux per year; Leg74; Morphometry; nannofossils; Nannofossils, flux per year; Noelaerhabdaceae, flux per year; phenotypic evolution; Sample code/label; South Atlantic/CREST; Sphenolithus spp., flux per year
    Type: Dataset
    Format: text/tab-separated-values, 324 data points
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  • 5
    Publication Date: 2023-11-25
    Description: Coccolithophores are globally important marine calcifying phytoplankton. They contribute to the organic carbon pump through the primary production and the ballast of organic matter, and to the carbonate pump through the production of calcium carbonate. Here we compiled all available scanning electron microscopy (SEM) coccolithophore abundance observations. Taxa were standardized following NannoTax3 to a species level where possible. Subspecies (e.a. C. leptoporus subsp. leptoporus and C. leptoporus subsp. quadriperforatus) were grouped as single species. The database contains 2556 abundance observations from 35 different publications. The data span the period of 1993-2017, with observations from all ocean basins and all seasons, and at depths ranging from the surface to 5000 m. We limited our compilation to SEM observations (or observations which further identified samples with SEM) because SEM provides greater detail of coccolithophore diversity than more commonly used polarized light microscopy. Although this limits the number of observations, this allows for a more in-depth analysis of coccolithophore ecology, such as the ecological significance of the coccolithophore life cycle.
    Keywords: Acanthoica acanthifera; Acanthoica acanthos; Acanthoica biscayensis; Acanthoica maxima; Acanthoica quattrospina; Acanthoica spp.; Algirosphaera cucullata; Algirosphaera robusta; Algirosphaera spp.; Alisphaera capulata; Alisphaera extenta; Alisphaera gaudii; Alisphaera ordinata; Alisphaera pinnigera; Alisphaera quadrilatera; Alisphaera spp.; Alisphaera unicornis; Anthosphaera lafourcadii; Anthosphaera periperforata; Anthosphaera spp.; Balaniger virgulosa; Braarudosphaera bigelowii; Calcidiscus leptoporus; Calcidiscus spp.; Calciopappus caudatus; Calciopappus spp.; Calciosolenia brasiliensis; Calciosoleniaceae spp.; Calciosolenia murrayi; Calciosolenia spp.; Calicasphaera blokii; Calicasphaera concava; Calicasphaera diconstricta; Calyptrolithina multipora; Calyptrosphaera cialdii; Calyptrosphaera dentata; Calyptrosphaera heimdalae; Calyptrosphaera sphaeroidea; Canistrolithus spp.; Canistrolithus valliformis; Ceratolithus cristatus; Ceratolithus spp.; Chrysotila carterae; Chrysotila roscoffensis; Coccoliths, other; Coccolithus pelagicus; Corisphaera gracilis; Corisphaera spp.; Corisphaera tyrrheniensis; Coronosphaera maxima; Coronosphaera mediterranea; Coronosphaera spp.; Cyrtosphaera aculeata; Cyrtosphaera cidaris; Cyrtosphaera spp.; DATE/TIME; DEPTH, water; Discosphaera tubifera; Emiliania huxleyi; Ericiolus sp.; Florisphaera profunda; Flosculosphaera calceolariopsis; Formonsella pyramidosa; Gephyrocapsa ericsonii; Gephyrocapsa muellerae; Gephyrocapsa oceanica; Gephyrocapsa ornata; Gephyrocapsa spp.; Gladiolithus flabellatus; Gliscolithus amitakareniae; Hayaster perplexus; Helicosphaera carteri; Helicosphaera cornifera; Helicosphaera hyalina; Helicosphaera pavimentum; Helicosphaera spp.; Helicosphaera wallichii; Helladosphaera cornifera; Helladosphaera pienaarii; Helladosphaera vavilovii; Heterococcolithophores; Holococcolithophora kastriensis; Holococcolithophore spp.; Homozygosphaera spinosa; Homozygosphaera spp.; Homozygosphaera triarcha; Homozygosphaera vercelli; Hughesius youngii; Hymenomonas lacuna; Hymenomonas roseola; Hymenomonas spp.; Jomonlithus spp.; LATITUDE; LONGITUDE; Michaelsarsia adriaticus; Michaelsarsia elegans; Michaelsarsia spp.; Ochrosphaera neapolitana; Oolithotus antillarum; Oolithotus fragilis; Oolithotus spp.; Ophiaster formosus; Ophiaster hydroideus; Ophiaster minimus; Ophiaster reductus; Ophiaster spp.; Palusphaera sp.; Palusphaera spp.; Palusphaera vandelii; Pappomonas borealis; Pappomonas flabellifera; Pappomonas sp.; Pappomonas spp.; Papposphaera arctica; Papposphaera lepida; Papposphaera sagittifera; Papposphaera sp.; Papposphaera spp.; Papposphaera thomsenii; Picarola margalefii; Placorhombus ziveriae; Polycrater sp.; Polycrater spp.; Pontosphaera discopora; Pontosphaera japonica; Pontosphaera multipora; Pontosphaera spp.; Pontosphaera syracusana; Poricalyptra aurisinae; Poricalyptra isselii; Poricalyptra magnaghii; Poritectolithus maximus; Poritectolithus poritectum; Pseudowigwamma scenozonion; Reference/source; Reticulofenestra parvula; Reticulofenestra sessilis; Reticulofenestra spp.; Rhabdosphaera clavigera; Rhabdosphaera spp.; Rhabdosphaera xiphos; Sample method; Scyphosphaera apsteinii; Scyphosphaera spp.; see sample method; Solisphaera helianthiformis; Solisphaera spp.; Sphaerocalyptra adenensis; Sphaerocalyptra dermitzakii; Sphaerocalyptra quadridentata; Sphaerocalyptra sp.; Sphaerocalyptra spp.; Syracolithus bicorium; Syracolithus quadriperforatus; Syracolithus schilleri; Syracolithus sp.; Syracolithus spp.; Syracosphaera amoena; Syracosphaera ampliora; Syracosphaera anthos; Syracosphaera arethusae; Syracosphaera bannockii; Syracosphaera borealis; Syracosphaera castellata; Syracosphaera corolla; Syracosphaera delicata; Syracosphaera dilatata; Syracosphaera epigrosa; Syracosphaera exigua; Syracosphaera florida; Syracosphaera gaarderae; Syracosphaera halldalii; Syracosphaera hastata; Syracosphaera histrica; Syracosphaera lamina; Syracosphaera leptolepis; Syracosphaera marginiporata; Syracosphaera molischii; Syracosphaera nana; Syracosphaera nodosa; Syracosphaera noroitica; Syracosphaera orbiculus; Syracosphaera ossa; Syracosphaera prolongata; Syracosphaera protrudens; Syracosphaera pulchra; Syracosphaera reniformis; Syracosphaera rotula; Syracosphaera sp.; Syracosphaera spp.; Syracosphaera squamosa; Syracosphaera strigilis; Syracosphaera tumularis; Tergestiella adriatica; Tetralithoides quadrilaminata; Turrilithus latericioides; Turrisphaera spp.; Umbellosphaera irregularis; Umbellosphaera spp.; Umbellosphaera tenuis; Umbilicosphaera anulus; Umbilicosphaera foliosa; Umbilicosphaera hulburtiana; Umbilicosphaera sibogae; Umbilicosphaera spp.; Wigwamma antarctica; Wigwamma spp.; Wigwamma triradiata; Zygosphaera amoena; Zygosphaera marsilii
    Type: Dataset
    Format: text/tab-separated-values, 685008 data points
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  • 6
    Publication Date: 2024-01-09
    Description: This dataset contains raw coccolith size data and calculated parameters (Coccolith Volume Index and Aspect ratio) of the genus Helicosphaera at ODP Site 707 during the past 15 million years. Data was collected using the optical method described in Beaufort et al., 2014 (doi:10.1038/nprot.2014.028). Each measured coccolith is identified to the morphospecies-level.
    Keywords: 115-707A; AGE; biogeochemistry; coccolith; Coccoliths, area; Coccoliths, aspect ratio; Coccoliths, diameter; Coccoliths, grey level; Coccoliths, thickness; Coccoliths, volume; DRILL; Drilling/drill rig; Joides Resolution; Leg115; Morphometry; nannofossils; Natural logarithm; Ocean Drilling Program; ODP; phenotypic evolution; Sample ID; South Indian Ridge, South Indian Ocean; Species
    Type: Dataset
    Format: text/tab-separated-values, 32220 data points
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  • 7
    Publication Date: 2024-01-09
    Description: This dataset contains calcareous nannofossil flux data at ODP Site 707 during the past 15 million years. Samples were prepared using the drop technique (Bordiga et al., 2015; doi:10.1016/j.revmic.2015.05.002) and nannofossil abundance was determined under the polarized-light microscope. Fluxes were calculated from the absolute abundances and the site-specific mass accumulation rates (data from Suchéras-Marx and Henderiks (2014; doi:10.1016/j.gloplacha.2014.10.015)) with reproducibility of ±15%.
    Keywords: 115-707A; AGE; biogeochemistry; Calcidiscaceae, flux per year; Calculated; coccolith; Coccolithaceae, flux per year; DEPTH, sediment/rock; Discoaster spp., flux per year; DRILL; Drilling/drill rig; DSDP/ODP/IODP sample designation; Florisphaera profunda, flux per year; Helicosphaera spp., flux per year; Joides Resolution; Leg115; Morphometry; nannofossils; Nannofossils, flux per year; Noelaerhabdaceae, flux per year; Ocean Drilling Program; ODP; phenotypic evolution; Sample code/label; South Indian Ridge, South Indian Ocean; Sphenolithus spp., flux per year
    Type: Dataset
    Format: text/tab-separated-values, 342 data points
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  • 8
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    PANGAEA
    In:  Supplement to: Gerecht, Andrea; Šupraha, Luka; Langer, Gerald; Henderiks, Jorijntje (2018): Phosphorus limitation and heat stress decrease calcification in Emiliania huxleyi. Biogeosciences, 15(3), 833-845, https://doi.org/10.5194/bg-15-833-2018
    Publication Date: 2024-01-26
    Description: Calcifying haptophytes (coccolithophores) sequester carbon in the form of organic and inorganic cellular components (coccoliths). We examined the effect of phosphorus (P) limitation and heat stress on particulate organic and inorganic carbon (calcite) production in the coccolithophore Emiliania huxleyi. Both environmental stressors are related to rising CO2 levels and affect carbon production in marine microalgae, which in turn impacts biogeochemical cycling. Using semi-continuous cultures, we show that P limitation and heat stress decrease the calcification rate in E. huxleyi. However, using batch cultures, we show that different culturing approaches (batch versus semi-continuous) induce different physiologies. This affects the ratio of particulate inorganic (PIC) to organic carbon (POC) and complicates general predictions on the effect of P limitation on the PIC/POC ratio. We found heat stress to increase P requirements in E. huxleyi, possibly leading to lower standing stocks in a warmer ocean, especially if this is linked to lower nutrient input. In summary, the predicted rise in global temperature and resulting decrease in nutrient availability may decrease CO2 sequestration by E. huxleyi through lower overall carbon production. Additionally, the export of carbon may be diminished by a decrease in calcification and a weaker coccolith ballasting effect.
    Keywords: Abundance per volume; Alkalinity, total; Carbon, organic, particulate, per cell; Cell, diameter; Cell, diameter, standard deviation; Coccoliths; Coccoliths, incomplete; Coccoliths, malformed; Coccoliths per coccosphere; Coccoliths per coccosphere, standard deviation; Equivalent spherical diameter; Experiment; Growth rate; Number of cells; Oslo_Fjord; pH; Phosphate; Phosphorus, organic, particulate, per cell; Replicate; Species; Total particulate carbon per cell; Treatment: nutrients; Treatment: temperature
    Type: Dataset
    Format: text/tab-separated-values, 2012 data points
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  • 9
    Publication Date: 2020-05-04
    Description: Global warming is rapidly altering physicochemical attributes of Arctic waters. These changes are predicted to alter microbial networks, potentially perturbing wider community functions including parasite infections and saprotrophic recycling of biogeochemical compounds. Specifically, the interaction between autotrophic phytoplankton and heterotrophic fungi e.g. chytrids (fungi with swimming tails) requires further analysis. Here, we investigate the diversity and distribution patterns of fungi in relation to abiotic variables during one record sea ice minimum in 2012 and explore co-occurrence of chytrids with diatoms, key primary producers in these changing environments. We show that chytrid fungi are primarily encountered at sites influenced by sea ice melt. Furthermore, chytrid representation positively correlates with sea ice-associated diatoms such as Fragilariopsis or Nitzschia. Our findings identify a potential future scenario where chytrid representation within these communities increases as a consequence of ice retreat, further altering community structure through perturbation of parasitic or saprotrophic interaction networks
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 10
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    European Journal of Phycology
    In:  EPIC37th European Phycological Congress, Zagreb, Croatia, 2019-08-25-2019-08-30European Journal of Phycology
    Publication Date: 2019-09-04
    Description: The comprehensive description of unicellular heterotrophic protists is essential for understanding the functioning of marine ecosystems and defining evolutionary relationships within marine microbial communities. For that reason, new insights into the functional genes of key protists, such as ciliates and dinoflagellates, are needed to complement the increasing taxonomic complexity and bridge the gap between various eco-functional processes in the ocean. In this study, single-cell transcriptomic sequencing proved to be an efficient method to create a snapshot of expressed genes of unicellular heterotrophs. We sequenced 65 single-cell transcriptomes from 20 fresh field samples collected from Sub-Arctic and North Sea waters. These 13 ciliate and 52 dinoflagellate transcriptomes will generally contribute to a greater understanding of functional and evolutionary processes of these marine protists. Further, we generated multi-gene phylogenies of several dozen genes to unravel the relationships of these heterotrophic taxa to other dinoflagellates and ciliates, respectively. These approaches also helped to elucidate the evolution of functional genes and traits for these understudied essential groups. Additionally, the datasets were incorporated into our metatranscriptomic reference database to fill the gap (of approx. 50%) of genomic information of heterotrophic organisms and their functional processes. Overall, identifying the phylogenetic relationships and functional diversity of heterotrophic and mixotrophic protists will clarify paramount marine microbial food web processes and provide clues to the system's sensitivity to climate change.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
    Format: application/pdf
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