In:
ZooKeys, Pensoft Publishers, Vol. 1129 ( 2022-11-11), p. 55-72
Abstract:
Fish are the largest vertebrate group, consisting of more than 30 000 species with important ecological and economical value, while less than 3% of fish genomes have been published. Herein, a fish, Chirolophis japonicus , was sequenced using the next-generation sequencing. Approximately 595.7 megabase pair of the C. japonicus genome was assembled (49 901 contigs with 42.61% GC contents), leading to a prediction of 46 729 protein-coding gene models. A total of 554 136 simple sequence repeats was identified in the whole genome of C. japonicus , and dinucleotide microsatellite motifs were the most abundant, accounting for 59.49%. Phylogenomic analysis of 16 genomes based on the 694 single-copy genes suggests that C. japonicus is closely related with Anarrhichthys ocellatus , Cebidichthys violaceus , and Pholis gunnellus . The results provide more thorough genetic information of C. japonicus and a theoretical basis and reference for further genome-wide analysis.
Type of Medium:
Online Resource
ISSN:
1313-2970
,
1313-2989
DOI:
10.3897/zookeys.1129.91543
DOI:
10.3897/zookeys.1129.91543.figure1
DOI:
10.3897/zookeys.1129.91543.figure2
DOI:
10.3897/zookeys.1129.91543.figure3
DOI:
10.3897/zookeys.1129.91543.figure4
DOI:
10.3897/zookeys.1129.91543.figure5
DOI:
10.3897/zookeys.1129.91543.suppl1
DOI:
10.3897/zookeys.1129.91543.suppl2
Language:
Unknown
Publisher:
Pensoft Publishers
Publication Date:
2022
detail.hit.zdb_id:
2445640-8
SSG:
12
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