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  • 11
    Publication Date: 2023-11-15
    Description: The distribution of diazotrophs and the magnitude of N2 fixation along with the input of new N through this process remains poorly constrained globally, but particularly in the Southern Pacific Ocean. Here we present a high-resolution dataset (every 0.5° latitude) describing the different N-cycling pathways which control the fixation and sequestration of carbon in the surface waters along a 7000 km transect in the South Pacific Ocean. Key oceanographic features along the P15S GO-SHIP transect from the Antarctic ice edge to the equator, included crossing of the subtropical front (STF), from the sub-Antarctic waters towards the oligotrophic tropics, and the equatorial upwelling region. We show how the natural isotopic abundance of particulate organic matter relate to different biogeochemical transformations in the N-cycle across four oceanic provinces. At all stations we measured N2 fixation rates. In the cold and nutrient rich waters of the Southern Ocean we found measurable N2 fixation rates (〉0.2 nmol L-1.d-1), which increased after the subtropical front, and remained at about 15 nmol L-1.d-1 until the equator. In the subtropical and tropical waters, the input of new nitrogen through N2 fixation could fuel on average 13±19% of the net primary productivity. Our data analysis showed that nitrifying organisms, from bacterial and archaeal genera such as Nitrospina, Nitrospinaceae, Nitrosopumilus, Nitrosopelagicus and Nitrosoarchaeum, prevailed in the Southern Ocean and within the STF. Nitrification rates ranged up to 60 nmol L-1.d-1 within the mixed layer depth in the Southern Ocean. Our results suggest that nitrification above the pycnoclines is an important component of the N cycle in the Southern Ocean. Our data has given us a better understanding of how the different N-cycling pathways relate to primary productivity in the South Pacific Ocean, as well as insights into the potential geographical N pathway shifts in light of the rapidly changing climate.
    Keywords: AWI_BioOce; Biological Oceanography @ AWI
    Type: Dataset
    Format: application/zip, 3 datasets
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  • 12
    Publication Date: 2024-02-16
    Description: Nitrogen fixation rates (nmol/l/day) were calculated using the 15N-15N enrichments of 6.6, 3.9 and 10.1.% (Klawonn et al 2015)
    Keywords: AWI_BioOce; Biological Oceanography @ AWI; DATE/TIME; DEPTH, water; Event label; IN2016-V03; IN2016-V03_102; IN2016-V03_103; IN2016-V03_105; IN2016-V03_106; IN2016-V03_107; IN2016-V03_109; IN2016-V03_110; IN2016-V03_114; IN2016-V03_115; IN2016-V03_118; IN2016-V03_119; IN2016-V03_12; IN2016-V03_121; IN2016-V03_122; IN2016-V03_124; IN2016-V03_125; IN2016-V03_126; IN2016-V03_128; IN2016-V03_129; IN2016-V03_13; IN2016-V03_131; IN2016-V03_132; IN2016-V03_134; IN2016-V03_136; IN2016-V03_139; IN2016-V03_140; IN2016-V03_15; IN2016-V03_17; IN2016-V03_19; IN2016-V03_2; IN2016-V03_20; IN2016-V03_21; IN2016-V03_23; IN2016-V03_24; IN2016-V03_26; IN2016-V03_27; IN2016-V03_29; IN2016-V03_3; IN2016-V03_30; IN2016-V03_31; IN2016-V03_33; IN2016-V03_34; IN2016-V03_36; IN2016-V03_37; IN2016-V03_38; IN2016-V03_39; IN2016-V03_40; IN2016-V03_41; IN2016-V03_43; IN2016-V03_44; IN2016-V03_47; IN2016-V03_49; IN2016-V03_5; IN2016-V03_50; IN2016-V03_52; IN2016-V03_53; IN2016-V03_54; IN2016-V03_56; IN2016-V03_57; IN2016-V03_6; IN2016-V03_60; IN2016-V03_62; IN2016-V03_64; IN2016-V03_65; IN2016-V03_66; IN2016-V03_67; IN2016-V03_69; IN2016-V03_70; IN2016-V03_71; IN2016-V03_73; IN2016-V03_76; IN2016-V03_77; IN2016-V03_78; IN2016-V03_8; IN2016-V03_80; IN2016-V03_81; IN2016-V03_84; IN2016-V03_86; IN2016-V03_88; IN2016-V03_89; IN2016-V03_9; IN2016-V03_90; IN2016-V03_92; IN2016-V03_95; IN2016-V03_96; IN2016-V03_98; IN2016-V03_99; Investigator (2014); LATITUDE; LONGITUDE; Nitrogen, total; Nitrogen-15, atmospheric; Nitrogen fixation rate; South Pacific Ocean; Water sample; WS; δ15N
    Type: Dataset
    Format: text/tab-separated-values, 1265 data points
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  • 13
    Publication Date: 2024-02-16
    Description: Nitrogen fixation rates (nmol/l/day) were calculated using the 15N-15N enrichments of 3.8 % (Klawonn et al 2015)
    Keywords: AWI_BioOce; Biological Oceanography @ AWI; DATE/TIME; DEPTH, water; Event label; IN2016_03_CTD102A-N2; IN2016_03_CTD102B-N2; IN2016_03_CTD103A-N2; IN2016_03_CTD103B-N2; IN2016_03_CTD105A-N2; IN2016_03_CTD105B-N2; IN2016_03_CTD106A-N2; IN2016_03_CTD106B-N2; IN2016_03_CTD107A-N2; IN2016_03_CTD107B-N2; IN2016_03_CTD109A-N2; IN2016_03_CTD109B-N2; IN2016_03_CTD110-N2; IN2016_03_CTD114A-N2; IN2016_03_CTD114B-N2; IN2016_03_CTD114C-N2; IN2016_03_CTD115A-N2; IN2016_03_CTD115B-N2; IN2016_03_CTD118B-N2; IN2016_03_CTD118-N2; IN2016_03_CTD119A-N2; IN2016_03_CTD119B-N2; IN2016_03_CTD121A-N2; IN2016_03_CTD121B-N2; IN2016_03_CTD122-N2; IN2016_03_CTD124A-N2; IN2016_03_CTD124B-N2; IN2016_03_CTD125A-N2; IN2016_03_CTD125B-N2; IN2016_03_CTD126-N2; IN2016_03_CTD128A-N2; IN2016_03_CTD128B-N2; IN2016_03_CTD129A-N2; IN2016_03_CTD129B-N2; IN2016_03_CTD12-N2; IN2016_03_CTD131-N2; IN2016_03_CTD132A-N2; IN2016_03_CTD132B-N2; IN2016_03_CTD134A-N2; IN2016_03_CTD134B-N2; IN2016_03_CTD136-N2; IN2016_03_CTD139A-N2; IN2016_03_CTD139B-N2; IN2016_03_CTD13-N2; IN2016_03_CTD140A-N2; IN2016_03_CTD140B-N2; IN2016_03_CTD14-N2; IN2016_03_CTD17B-N2; IN2016_03_CTD17-N2; IN2016_03_CTD18-N2; IN2016_03_CTD20-N2; IN2016_03_CTD21-N2; IN2016_03_CTD23A-N2; IN2016_03_CTD23-N2; IN2016_03_CTD24-N2; IN2016_03_CTD26-N2; IN2016_03_CTD27-N2; IN2016_03_CTD29-N2; IN2016_03_CTD2-N2; IN2016_03_CTD30-N2; IN2016_03_CTD31-N2; IN2016_03_CTD33-N2; IN2016_03_CTD34-N2; IN2016_03_CTD36-N2; IN2016_03_CTD37-N2; IN2016_03_CTD38-N2; IN2016_03_CTD39-N2; IN2016_03_CTD3-N2; IN2016_03_CTD40-N2; IN2016_03_CTD41-N2; IN2016_03_CTD43-N2; IN2016_03_CTD44-N2; IN2016_03_CTD47-N2; IN2016_03_CTD48-N2; IN2016_03_CTD50-N2; IN2016_03_CTD52-N2; IN2016_03_CTD53-N2; IN2016_03_CTD56-N2; IN2016_03_CTD57-N2; IN2016_03_CTD59-N2; IN2016_03_CTD5-N2; IN2016_03_CTD60-N2; IN2016_03_CTD62-N2; IN2016_03_CTD63-N2; IN2016_03_CTD64-N2; IN2016_03_CTD66-N2; IN2016_03_CTD67-N2; IN2016_03_CTD69-N2; IN2016_03_CTD6-N2; IN2016_03_CTD70-N2; IN2016_03_CTD71-N2; IN2016_03_CTD73-N2; IN2016_03_CTD74-N2; IN2016_03_CTD76-N2; IN2016_03_CTD77-N2; IN2016_03_CTD78-N2; IN2016_03_CTD80-N2; IN2016_03_CTD81-N2; IN2016_03_CTD83-N2; IN2016_03_CTD86A-N2; IN2016_03_CTD86B-N2; IN2016_03_CTD86C-N2; IN2016_03_CTD86D-N2; IN2016_03_CTD88-N2; IN2016_03_CTD89-N2; IN2016_03_CTD8-N2; IN2016_03_CTD90A-N2; IN2016_03_CTD90B-N2; IN2016_03_CTD91B-N2; IN2016_03_CTD91-N2; IN2016_03_CTD92-N2; IN2016_03_CTD93B-N2; IN2016_03_CTD93-N2; IN2016_03_CTD95B-N2; IN2016_03_CTD95-N2; IN2016_03_CTD96A-N2; IN2016_03_CTD96B-N2; IN2016_03_CTD96C-N2; IN2016_03_CTD98-N2; IN2016_03_CTD99B-N2; IN2016_03_CTD99-N2; IN2016_03_CTD9-N2; IN2016_04_CTD54-N2; LATITUDE; LONGITUDE; Nitrogen; Nitrogen, total; Nitrogen-15, atmospheric; Nitrogen fixation rate; Sample ID; South Pacific Ocean; Water sample; WS; δ15N
    Type: Dataset
    Format: text/tab-separated-values, 1205 data points
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  • 14
    Publication Date: 2017-01-20
    Description: Nitrous oxide (N2O) is a powerful greenhouse gas and a key catalyst of stratospheric ozone depletion. Yet, little data exist about the sink and source terms of the production and reduc- tion of N2O outside the well-known oxygen minimum zones (OMZ). Here we show the pres- ence of functional marker genes for the reduction of N2O in the last step of the denitrification process (nitrous oxide reductase genes; nosZ) in oxygenated surface waters (180–250 O2 μmol.kg-1) in the south-eastern Indian Ocean. Overall copy numbers indicated that nosZ genes represented a significant proportion of the microbial community, which is unexpected in these oxygenated waters. Our data show strong temperature sensitivity for nosZ genes and reaction rates along a vast latitudinal gradient (32°S-12°S). These data suggest a large N2O sink in the warmer Tropical waters of the south-eastern Indian Ocean. Clone sequenc- ing from PCR products revealed that most denitrification genes belonged to Rhodobactera- ceae. Our work highlights the need to investigate the feedback and tight linkages between nitrification and denitrification (both sources of N2O, but the latter also a source of bioavail- able N losses) in the understudied yet strategic Indian Ocean and other oligotrophic systems.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 15
    Publication Date: 2022-10-18
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in GigaScience 4 (2015): 27, doi:10.1186/s13742-015-0066-5.
    Description: Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.
    Description: This work was supported by the Micro B3 project, which is funded from the European Union’s Seventh Framework Programme (FP7; Joint Call OCEAN.2011‐2: Marine microbial diversity – new insights into marine ecosystems functioning and its biotechnological potential) under the grant agreement no 287589.
    Keywords: Ocean sampling day ; OSD ; Biodiversity ; Genomics ; Health index ; Bacteria ; Microorganism ; Metagenomics ; Marine ; Micro B3 ; Standards
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/pdf
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  • 16
    Publication Date: 2022-05-30
    Description: Unravelling the relationship between biological diversity and ecosystem resilience is a timeless topic dating back to Alexander von Humboldt’s expeditions in the early 19th century. While global oceanographic expeditions and basin-wide transects show positive correlations between microbial diversity and temperature or productivity, they often lack temporal replication, and include few high latitude observations especially during winter months. Here, using seasonal amplicon sequence data from six time-series in the northern and southern hemispheres, we show that on a multiannual basis marine microbial alpha-diversity (species richness and evenness) correlate most strongly with day length, rather than with temperature and chlorophyll a (as proxy for primary production), independent of the targeted 16S rRNA hypervariable region. By integrating data from 2003 to 2020, our evidence suggests that microbial diversity and annually recurring community composition are governed by similar principles, from subtropic to polar oceans. These global trends are consistent regardless of the collection methods, DNA extraction chemistry, sequencing technologies or bioinformatic pipelines. Hence, to understand drivers of marine microbial diversity, larger-scale studies need to embed their analyses into the context of regional seasonal variations. Overall, our synthesis reframes the fundamental drivers of marine microbial diversity as phenological, and suggests that although the state of the temperature and chlorophyll spectra should be considered, it is regular sampling over seasonal cycles that can disentangle these effects. Our findings support the idea that microbial diversity patterns and ecosystem stability are regulated by holistic feedback systems. Or as Alexander von Humboldt already stated, Nature is interconnected, linking ‘the little things’ with global interactions and patterns will allow us to place the observed microbial diversity into the bigger picture.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
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  • 17
    Publication Date: 2019-09-23
    Description: Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. This commentary outlines the establishment, function and aims of the Consortium and describes our vision for a sustainable study of marine microbial communities and their embedded functional traits.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 18
    Publication Date: 2024-02-07
    Description: Biomolecular ocean observing and research is a rapidly evolving field that uses omics approaches to describe biodiversity at its foundational level, giving insight into the structure and function of marine ecosystems over time and space. It is an especially effective approach for investigating the marine microbiome. To mature marine microbiome research and operations within a global ocean biomolecular observing network (OBON) for the UN Decade of Ocean Science for Sustainable Development and beyond, research groups will need a system to effectively share, discover, and compare “omic” practices and protocols. While numerous informatic tools and standards exist, there is currently no global, publicly-supported platform specifically designed for sharing marine omics [or any omics] protocols across the entire value-chain from initiating a study to the publication and use of its results. Toward that goal, we propose the development of the Minimum Information for an Omic Protocol (MIOP), a community-developed guide of curated, standardized metadata tags and categories that will orient protocols in the value-chain for the facilitated, structured, and user-driven discovery of suitable protocol suites on the Ocean Best Practices System. Users can annotate their protocols with these tags, or use them as search criteria to find appropriate protocols. Implementing such a curated repository is an essential step toward establishing best practices. Sharing protocols and encouraging comparisons through this repository will be the first steps toward designing a decision tree to guide users to community endorsed best practices.
    Type: Article , PeerReviewed
    Format: text
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  • 19
    Publication Date: 2024-02-07
    Description: Omic BON is a thematic Biodiversity Observation Network under the Group on Earth Observations Biodiversity Observation Network (GEO BON), focused on coordinating the observation of biomolecules in organisms and the environment. Our founding partners include representatives from national, regional, and global observing systems; standards organizations; and data and sample management infrastructures. By coordinating observing strategies, methods, and data flows, Omic BON will facilitate the co-creation of a global omics meta-observatory to generate actionable knowledge. Here, we present key elements of Omic BON's founding charter and first activities.
    Type: Article , PeerReviewed
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