Description: The groundmass of andesitic dykes at Sezaki, southwest Japan, has trachytic texture and contains microscopic shear zones. The shear zones comprise a conjugate pair formed by flattening of the solidifying dyke rock, probably caused by the magma pressure of the still molten part of the dyke. This pressure shortened the solidifying rock perpendicular to the dyke margins and caused it to extrude parallel to the magma flow direction. The groundmass shears indicate that locally the magma flowed 60° upward in the dykes. It is concluded that while groundmass shears are a useful indicator of flow direction in dykes, phenocryst alignment in dykes is strongly influenced by magma-pressure flattening and thus may be a poor indicator of flow direction.

Description: Cephalopods are highly sensitive to environmental conditions and changes at a range of spatial and temporal scales. Relationships documented between cephalopod stock dynamics and environmental conditions are of two main types: those concerning the geographic distribution of abundance, for which the mechanism is often unknown, and those relating to biological processes such as egg survival, growth, recruitment and migration, where mechanisms are sometimes known and in a very few cases demonstrated by experimental evidence. Cephalopods seem to respond to environmental variation both ‘actively’ (e.g. migrating to areas with more favoured environmental conditions for feeding or spawning) and ‘passively’ (growth and survival vary according to conditions experienced, passive migration with prevailing currents). Environmental effects on early life stages can affect life history characteristics (growth and maturation rates) as well as distribution and abundance. Both large-scale atmospheric and oceanic processes and local environmental variation appear to play important roles in species–environment interactions. While oceanographic conditions are of particular significance for mobile pelagic species such as the ommastrephid squids, the less widely ranging demersal and benthic species may be more dependent on other physical habitat characteristics (e.g. substrate and bathymetry). Coastal species may be impacted by variations in water quality and salinity (related to rainfall and river flow). Gaps in current knowledge and future research priorities are discussed. Key research goals include linking distribution and abundance to environmental effects on biological processes, and using such knowledge to provide environmental indicators and to underpin fishery management.

Description: The squid Nototodarus gouldi (McCoy, 1888) was caught by bottom trawl in Port Phillip Bay, Australia in February 1985. The squid accumulates in its digestive gland high levels of trace metals, with up to 100 μg Cd g-1 dry tissue, 1 200 μg g-1 copper and 1 500 μg g-1 zinc and up to 24 Bq g-1 of the naturally occurring radionuclide polonium-210. The molecular binding of these elements in six squid was investigated using column chromatography. Two poorly resolved copper peaks were associated with proteins of average molecular weights of 11 500 and 18 000. The two squid containing the highest levels of cadmium in their digestive glands (44 and 88 μg g-1) had cadmium associated with a peak of molecular weight intermediate between the copper-binding peaks, but this peak was absent from squid containing lower levels of cadmium. Zinc was associated with ligands of less than 1 500 molecular weight. The 210Po eluted with proteins of greater than 70 000 molecular weight, and there was no evidence of binding to low molecular weight proteins. Different mechanisms appear to be involved in the binding and control of the four elements.

Description: Nitrite (NO2−) is a substrate for both oxidative and reductive microbial metabolism. NO2− accumulates at the base of the euphotic zone in oxygenated, stratified open-ocean water columns, forming a feature known as the primary nitrite maximum (PNM). Potential pathways of NO2− production include the oxidation of ammonia (NH3) by ammonia-oxidizing bacteria and archaea as well as assimilatory nitrate (NO3−) reduction by phytoplankton and heterotrophic bacteria. Measurements of NH3 oxidation and NO3− reduction to NO2− were conducted at two stations in the central California Current in the eastern North Pacific to determine the relative contributions of these processes to NO2− production in the PNM. Sensitive (〈 10 nmol L−1), precise measurements of NH4+ and NO2− indicated a persistent NH4+ maximum overlying the PNM at every station, with concentrations as high as 1.5 μmol L−1. Within and just below the PNM, NH3 oxidation was the dominant NO2− producing process, with rates of NH3 oxidation to NO2− of up to 31 nmol L-1 d-1, coinciding with high abundances of ammonia-oxidizing archaea. Though little NO2− production from NO3− was detected, potentially nitrate-reducing phytoplankton (photosynthetic picoeukaryotes, 〈i〉Synechococcus〈/i〉, and 〈i〉Prochlorococcus〈/i〉) were present at the depth of the PNM. Rates of NO2− production from NO3− were highest within the upper mixed layer (4.6 nmol L-1 d-1) but were either below detection limits or 10 times lower than NH3 oxidation rates around the PNM. One-dimensional modeling of water column NO2− production agreed with production determined from 15N bottle incubations within the PNM, but a modeled net biological sink for NO2− just below the PNM was not captured in the incubations. Residence time estimates of NO2− within the PNM ranged from 18 to 470 days at the mesotrophic station and was 40 days at the oligotrophic station. Our results suggest the PNM is a dynamic, rather than relict, feature with a source term dominated by ammonia oxidation. © 2013 Author(s).

Description: Dissolved organic nitrogen (DON) supports a significant amount of heterotrophic production in the ocean. Yet, to date, the identity and diversity of microbial groups that transform DON are not well understood. To better understand the organisms responsible for transforming high molecular weight (HMW)-DON in the upper ocean, isotopically labeled protein extract from Micromonas pusilla, a eukaryotic member of the resident phytoplankton community, was added as substrate to euphotic zone water from the central California Current system. Carbon and nitrogen remineralization rates from the added proteins ranged from 0.002 to 0.35 μmol C l -1 per day and 0.03 to 0.27 nmol N l -1 per day. DNA stable-isotope probing (DNA-SIP) coupled with high-throughput sequencing of 16S rRNA genes linked the activity of 77 uncultivated free-living and particle-associated bacterial and archaeal taxa to the utilization of Micromonas protein extract. The high-throughput DNA-SIP method was sensitive in detecting isotopic assimilation by individual operational taxonomic units (OTUs), as substrate assimilation was observed after only 24 h. Many uncultivated free-living microbial taxa are newly implicated in the cycling of dissolved proteins affiliated with the Verrucomicrobia, Planctomycetes, Actinobacteria and Marine Group II (MGII) Euryarchaeota. In addition, a particle-associated community actively cycling DON was discovered, dominated by uncultivated organisms affiliated with MGII, Flavobacteria, Planctomycetes, Verrucomicrobia and Bdellovibrionaceae. The number of taxa assimilating protein correlated with genomic representation of TonB-dependent receptor (TBDR)-encoding genes, suggesting a possible role of TBDR in utilization of dissolved proteins by marine microbes. Our results significantly expand the known microbial diversity mediating the cycling of dissolved proteins in the ocean. © 2016 International Society for Microbial Ecology All rights reserved.