Description: Time-series observations provide an essential baseline to identify biological responses to environmental fluctuations, and to distinguish natural variability from human impact. Here, we describe for the first time year-round microbial and oceanographic dynamics in the partially ice-covered Fram Strait (Arctic Ocean) using autonomous samplers deployed as part of the infrastructure program FRAM, allowing unprecedented insights into the marine microbial ecology of the polar night. Bacterial communities showed a strong seasonal signal, especially in the West Spitsbergen Current. Here, distinct temporal succession of phytoplankton and bacterial clades occurred, including covariance of the magnetotactic bacterium Magnetospira with daylight hours. Summer featured weekly variability in blooming taxa, including the flavobacterial genera Formosa and Polaribacter succeeding peaks of the diatoms Thalassiosira and Grammonema. The Bacteroidetes peak in summer was followed by dominance of SAR11 in fall and Nitrosopumilus in winter, suggesting timely controlled ecological roles. Bacterial diversity was highest in winter, featuring elevated abundances of Planctomycetes and Nitrospinia as well as the heterotrophic eukaryote taxa Syndiniales and Radiolaria. Late winter was characterized by increasing proportions of e.g. Dadabacteria before the onset of the productive season. In the ice-covered East Greenland Current (Arctic Ocean outflow), bacterial community structure showed less seasonality. Here, bacterial diversity decreased in response to ice cover dynamics and nitrate availability, underlining that changing ice and light regimes likely impact plankton diversity and biogeochemical processes.

Description: Im "Hausgarten" zwischen Grönland und Spitzbergen untersucht das AWI seit 20 Jahren, wie sich der Arktische Ozean durch den Klimawandel verändert - von der Meeresoberfläche in die Tiefsee; von Mikroben bis zu Meeressäugern. Der Meeresbiologe Matthias Wietz erforscht dabei die Gemeinschaft der Mikroorganismen über die Jahreszeiten und Jahre. Bei "Wissenschaft fürs Wohnzimmer" erzählt Matthias von Fingerabdrücken der Mikroben, Autonomem Fahren auf dem Tiefseeboden und Eiskernbohren mit Eisbärwache - Einblicke, welche die Einzigartigkeit und Verletzlichkeit des arktischen Ökosystems dokumentieren. (Dies ist ein Beitrag zu "Wissenschaft fürs Wohnzimmer" - YouTube-Livestreams zur Wissenschaftskommunikation. Diese wöchentliche Reihe wird von AWIs4Future organisiert und präsentiert der interessierten Öffentlichkeit Forschung des AWI und von anderen Instituten.)

Description: The biological carbon pump removes CO2 from the atmosphere via phytoplankton growth in the sunlit stratified upper ocean. This is followed by a partial export to deeper water layers and finally deposition on the sea floor. In polar regions, sea ice affects stratification and light availability. However, it remains unclear to what extent sea ice cover affects the biological carbon pump. Additionally, climate change is expected to increase the seasonal ice zone (i.e., the part of the ocean that is ice-covered for part of the year). Observational time series of the seasonal cycle contrasting production and export in ice-covered and ice-free conditions are still scarce. Here, we present multidisciplinary time series observations from the marginal ice zone in Fram Strait (located between Greenland and Svalbard) of all ocean compartments from the sea surface to the seafloor. Data are from two contrasting years when our measurement site was either partially ice-covered (2016-2017) or when the ice edge was located further to the north (2017-2018). We start by introducing the study site followed by a description of the atmospheric forcing and its effects on the upper ocean stratification and hydrography. In mostly ice-free conditions, the mixed layer went from deep to stratified in a single event, whereas the presence of sea ice resulted in a number of alternating events of shallow and deep mixed layers. These patterns changed phytoplankton and bacterial dynamics and upper ocean chemistry. The onset of the bloom was much more gradual in the presence of sea ice. We also explore the different trophic levels in the upper that contributed to the export recorded at the seafloor which fueled biological benthic activity a few weeks after the bloom. Our observations reveal an impact of the respective sea ice patterns on concomitant species and biogeochemical reactions in the upper water column and for the export of organic matter to the deep sea in the Fram Strait.

Description: Carbohydrate-active enzymes (CAZymes) are an important feature of bacteria in productive marine systems such as continental shelves, where phytoplankton and macroalgae produce diverse polysaccharides. We herein describe Maribacter dokdonensis 62–1, a novel strain of this flavobacterial species, isolated from alginate-supplemented seawater collected at the Patagonian continental shelf. M. dokdonensis 62–1 harbors a diverse array of CAZymes in multiple polysaccharide utilization loci (PUL). Two PUL encoding polysaccharide lyases from families 6, 7, 12, and 17 allow substantial growth with alginate as sole carbon source, with simultaneous utilization of mannuronate and guluronate as demonstrated by HPLC. Furthermore, strain 62-1 harbors a mixed-feature PUL encoding both ulvan- and fucoidan-targeting CAZymes. Core-genome phylogeny and pangenome analysis revealed variable occurrence of these PUL in related Maribacter and Zobellia strains, indicating specialization to certain “polysaccharide niches.” Furthermore, lineage- and strain-specific genomic signatures for exopolysaccharide synthesis possibly mediate distinct strategies for surface attachment and host interaction. The wide detection of CAZyme homologs in algae-derived metagenomes suggests global occurrence in algal holobionts, supported by sharing multiple adaptive features with the hydrolytic model flavobacterium Zobellia galactanivorans. Comparison with Alteromonas sp. 76-1 isolated from the same seawater sample revealed that these co-occurring strains target similar polysaccharides but with different genomic repertoires, coincident with differing growth behavior on alginate that might mediate ecological specialization. Altogether, our study contributes to the perception of Maribacter as versatile flavobacterial polysaccharide degrader, with implications for biogeochemical cycles, niche specialization and bacteria-algae interactions in the oceans.

Description: Polysaccharide particles are important substrates and microhabitats for marine bacteria. However, substrate-specific bacterial dynamics in mixtures of particle types with different polysaccharide composition, as likely occurring in natural habitats, are undescribed. Here, we studied the composition, functional diversity and gene expression of marine bacterial communities colonising a mix of alginate and pectin particles. Amplicon, metagenome and metatranscriptome sequencing revealed that communities on alginate and pectin particles significantly differed from their free-living counterparts. Unexpectedly, microbial dynamics on alginate and pectin particles were similar, with predominance of amplicon sequence variants (ASVs) from Tenacibaculum, Colwellia, Psychrobium and Psychromonas. Corresponding metagenome-assembled genomes (MAGs) expressed diverse alginate lyases, several co-localised in polysaccharide utilisation loci. Only a single, low-abundant MAG showed elevated transcript abundances of pectin-degrading enzymes. One specific Glaciecola ASV dominated the free-living fraction, possibly persisting on particle-derived oligomers through different glycoside hydrolases. Elevated ammonium uptake and metabolism signified nitrogen as important factor for degrading carbon-rich particles, whereas elevated methylcitrate and glyoxylate cycles suggested nutrient limitation in surrounding waters. The bacterial preference for alginate, whereas pectin primarily served as colonization scaffold, illuminates substrate-driven dynamics within mixed polysaccharide pools. These insights expand our understanding of bacterial niche specialisation and the biological carbon pump in macroalgae-rich habitats.

Description: Microbial diversity and ecology along the marked seasonal contrasts in Arctic waters remain poorly understood. Here, using autonomous sampling, we evaluate community dynamics of bacteria, archaea and microbial eukaryotes over three annual cycles in Fram Strait (Arctic Ocean). We observed marked recurrent seasonality in the ice-free West Spitsbergen Current, with consistent shifts between photoautotrophic and heterotrophic microbes driven by temperature and daylight. However, the major phytoplankton bloomer differed by year, featuring Grammonema (2017), Chaetoceros (2018) and Thalassiosira (2019). Different microbiome patterns in the following winters indicate that the quality and quantity of organic matter depends on phytoplankton bloom dynamics, with cascading effects on heterotrophic nutrient recycling during polar night. The East Greenland Current displayed season-independent community turnover, shaped by variable ice cover and the proportions of Polar water. Our evidence of microbial seasonality in Arctic waters provides an essential baseline of ecosystem dynamics in a region severely affected by climate change, with implications for the present and future Arctic Ocean.

Description: Submesoscale eddies and fronts are important components of oceanic mixing and energy fluxes. These phenomena occur in the surface ocean for a period of several days, on scales between a few hundred meters and few tens of kilometers. Remote sensing and modeling suggest that eddies and fronts may influence marine ecosystem dynamics, but their limited temporal and spatial scales make them challenging for observation and in situ sampling. Here, the study of a submesoscale filament in summerly Arctic waters (depth 0–400 m) revealed enhanced mixing of Polar and Atlantic water masses, resulting in a ca. 4 km wide and ca. 50 km long filament with distinct physical and biogeochemical characteristics. Compared to the surrounding waters, the filament was characterized by a distinct phytoplankton bloom, associated with depleted inorganic nutrients, elevated chlorophyll a concentrations, as well as twofold higher phyto- and bacterioplankton cell abundances. High-throughput 16S rRNA gene sequencing of bacterioplankton communities revealed enrichment of typical phytoplankton bloom-associated taxonomic groups (e.g., Flavobacteriales) inside the filament. Furthermore, linked to the strong water subduction, the vertical export of organic matter to 400 m depth inside the filament was twofold higher compared to the surrounding waters. Altogether, our results show that physical submesoscale mixing can shape distinct biogeochemical conditions and microbial communities within a few kilometers of the ocean. Hence, the role of submesoscale features in polar waters for surface ocean biodiversity and biogeochemical processes need further investigation, especially with regard to the fate of sea ice in the warming Arctic Ocean.

Description: The Pacific Ocean constitutes about half of the global oceans and thus microbial processes in this ocean have a large impact on global elemental cycles. Despite several intensely studied regions large areas are still greatly understudied regarding microbial activities, organic matter cycling and biogeography. Refined information about these features is most important to better understand the significance of this ocean for global biogeochemical and elemental cycles. Therefore we investigated a suite of microbial and geochemical variables along a transect from the subantarctic to the subarctic Pacific in the upper 200 m of the water column. The aim was to quantify rates of organic matter processing, identify potential controlling factors and prokaryotic key players. The assessed variables included abundance of heterotrophic prokaryotes and cyanobacteria, heterotrophic prokaryotic production (HPP), turnover rate constants of amino acids, glucose, and acetate, leucine aminopeptidase and β-glucosidase activities, and the composition of the bacterial community by fluorescence in situ hybridization (FISH). The additional quantification of nitrate, dissolved amino acids and carbohydrates, chlorophyll a, particulate organic carbon and nitrogen (POC, PON) provided a rich environmental context. The oligotrophic gyres exhibited the lowest prokaryotic abundances, rates of HPP and substrate turnover. Low nucleic acid prokaryotes dominated in these gyres, whereas in temperate and subpolar regions further north and south, high nucleic acid prokaryotes dominated. Turnover rate constants of glucose and acetate, as well as leucine aminopeptidase activity, increased from (sub)tropical toward the subpolar regions. In contrast, HPP and bulk growth rates were highest near the equatorial upwelling and lowest in the central gyres and subpolar regions. The SAR11 clade, the Roseobacter group and Flavobacteria constituted the majority of the prokaryotic communities. Vertical profiles of the biogeochemical and microbial variables markedly differed among the different regions and showed close covariations of the microbial variables and chlorophyll a, POC and PON. The results show that hydrographic, microbial, and biogeochemical properties exhibited distinct patterns reflecting the biogeographic provinces along the transect. The microbial variables assessed contribute to a better and refined understanding of the scales of microbial organic matter processing in large areas of the epipelagic Pacific beyond its well-studied regions.