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  • Alkalinity, total; Aragonite saturation state; Atlantic Ocean; Bicarbonate ion; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate chemistry; Carbonate ion; Carbon dioxide; DATE/TIME; Dendrophyllia_Bycatch; Experimental treatment; Experiment duration; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Laboratory experiment; NE Atlantic; NW Spain; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Potentiometric titration; Replicate; Salinity; Species; Species, unique identification (Semantic URI); Species, unique identification (URI); Spectrophotometric; Treatment: temperature; Type of study; WTW Multi Set 350i multiparameter probe  (1)
  • Atlantic Ocean; Comment; DATE/TIME; Dendrophyllia_Bycatch; Experimental treatment; Experiment duration; Flow cytometer, Beckman Coulter, CytoFLEX S (N-V-B-R); flow cytometry; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Laboratory experiment; NE Atlantic; NW Spain; Prokaryotes; prokaryotic abundance; Replicate; Species; Species, unique identification (Semantic URI); Species, unique identification (URI); Type of study  (1)
  • Brain biopsy  (1)
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  • 1
    ISSN: 1432-1459
    Keywords: Key words AIDS ; Brain biopsy ; Cerebral spinal fluid ; Polymerase chain reaction
    Source: Springer Online Journal Archives 1860-2000
    Topics: Medicine
    Notes: Abstract Twenty patients with AIDS who had intracranial lesions underwent both brain biopsy and cerebro-spinal fluid (CSF) examination to compare histological diagnosis with the polymerase chain reaction (CSF-PCR) for the identification of infectious agents. CSF-PCR was performed for herpes simplex virus, varicella zoster virus, cytomegalovirus (CMV), JC virus (JCV), Epstein-Barr virus (EBV), Toxoplasma gondii and Mycobacterium tuberculosis. A definitive diagnosis was obtained by brain biopsy in 14 patients (2 with astrocytoma, 12 with brain infection). CSF-PCR was positive for EBV DNA in 3 of 3 cases of primary cerebral lymphoma, positive for JCV DNA in 6 of 7 biopsy-proven (and one autopsy-proven) cases of progressive multifocal leukoencephalopathy (PML). CSF-PCR was positive for CMV DNA in one biopsy-proven and one autopsy-proven case of CMV encephalitis (the former also had PML) and positive for M. tuberculosis DNA in one case of tuberculous encephalitis. None of the five toxoplasmic encephalitis cases (one definite, four presumptive) were T. gondii DNA positive. There was close correlation between histology and CSF-PCR for CMV encephalitis, PML and PCL. Antitoxoplasma therapy affected the sensitivity of both histological and CSF-PCR methods.
    Type of Medium: Electronic Resource
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2024-03-19
    Description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain) between 2022-05-06 and 2023-02-24. Treatment values for each parameter (current in situ vs. climate change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. Prokaryotes were quantified by flow citometry (CytoFLEXflex S, Beckman Coulter) as previously described by Gasol et al. (1999) with our own adjustment of the scatter settings to more accurately resolve these cells with the new CytoFLEX flow cytometry technology. Measurements were performed every month from different parts of the aquaria setup: the input seawater, the reservoir tank (after the filtration of seawater to 5 µm and before the UV lamp) and every experimental aquaria.
    Keywords: Atlantic Ocean; Comment; DATE/TIME; Dendrophyllia_Bycatch; Experimental treatment; Experiment duration; Flow cytometer, Beckman Coulter, CytoFLEX S (N-V-B-R); flow cytometry; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Laboratory experiment; NE Atlantic; NW Spain; Prokaryotes; prokaryotic abundance; Replicate; Species; Species, unique identification (Semantic URI); Species, unique identification (URI); Type of study
    Type: Dataset
    Format: text/tab-separated-values, 1260 data points
    Location Call Number Limitation Availability
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  • 3
    Publication Date: 2024-03-19
    Description: A 9-month aquarium experiment with the cold-water Dendrophyllia cornigera was conducted to investigate the single and combined effects of warming, acidification and deoxygenation on its ecophysiological response. The experiment took place at the Aquarium finisterrae (A Coruña, Spain) between 2022-05-06 and 2023-02-24. Treatment values for each parameter (current in situ vs. climate change) were: 12 °C and 15 °C (temperature); ~7.99 and 7.69 (pH); ~8.63 mg/L and 6.45 mg/L (dissolved oxygen concentration). A total of eight treatments (with 3 replicates each, 5 L aquaria) were set up. Measurements for pH and total alkalinity (TA) were performed on seawater samples from all the experimental aquaria every 1 – 2 months. Samples for pH were directly collected on cylindrical 10 cm cuvettes and analysed on daily basis. After being thermostated at 25ºC, samples were measured using a manual spectrophotometrical procedure with a Sigma Aldrich impure indicator (Clayton and Byrne, 1993). TA was measured following the double end point potentiometric technique by Pérez and Fraga (1987a) and Pérez et al. (2000). Measurements of Certified Reference Material (Dickson's lab, SIO) were performed in order to control the accuracy of the TA measurements. The uncertainty of TA and pH is about 3 μmol/kg and 0.005 pH units, respectively. In situ additional CO2 system variables were calculated using the R package seacarb (Gattuso et al. 2023) using in situ temperature, salinity, measured pH and TA, the dissociation constants of carbonic acid in seawater (K1 and K2) by Lueker et al. (2000), the equilibrium constant of hydrogen fluoride by Perez and Fraga (1987b), the concentration of total boron by Uppström (1974) formulation, and the stability constant of hydrogen sulphate by Dickson (1990). Mean values for the concentration of silicate and phosphate on the aquaria experiments were used in the CO2 calculations, respectively, mean (and standard) deviations as 2.1 (0.4) and 0.31 (0.03) μmol/kg.
    Keywords: Alkalinity, total; Aragonite saturation state; Atlantic Ocean; Bicarbonate ion; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate chemistry; Carbonate ion; Carbon dioxide; DATE/TIME; Dendrophyllia_Bycatch; Experimental treatment; Experiment duration; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Laboratory experiment; NE Atlantic; NW Spain; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; Potentiometric titration; Replicate; Salinity; Species; Species, unique identification (Semantic URI); Species, unique identification (URI); Spectrophotometric; Treatment: temperature; Type of study; WTW Multi Set 350i multiparameter probe
    Type: Dataset
    Format: text/tab-separated-values, 2822 data points
    Location Call Number Limitation Availability
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