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  • 1
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2013
    In:  ICES Journal of Marine Science Vol. 70, No. 3 ( 2013-04-01), p. 511-522
    In: ICES Journal of Marine Science, Oxford University Press (OUP), Vol. 70, No. 3 ( 2013-04-01), p. 511-522
    Abstract: Bullimore, R. D., Foster, N. L., and Howell, K. L. 2013. Coral-characterized benthic assemblages of the deep Northeast Atlantic: defining “Coral Gardens” to support future habitat mapping efforts – ICES Journal of Marine Science, 70: 511–522. Providing statistically robust maps of habitat distributions on which to base spatial planning and management of the marine area is reliant upon established and agreed descriptions and definitions of habitats. “Coral Gardens” is an Oslo–Paris Convention (OSPAR) listed habitat, which currently cannot be reliably mapped as a result of poorly developed deep-sea habitat classification systems and habitat definitions. The aim of this study is to assess and inform development of the current definition of this habitat to support future mapping efforts. This study uses multivariate community analysis of video data to identify deep-sea benthic assemblages characterized by coral taxa and thus constituting a potential “coral gardens” habitat. Assemblages are assessed against a set of qualifying criteria, derived from current definitions of “coral gardens”, first at the assemblage level then sample by sample. The current definition of “coral gardens” captures a range of benthic assemblages, thus “Coral Gardens” cannot be considered a single “habitat”. While 19 assemblages are identified as being characterized by one or more coral garden taxa, only 8 meet the qualifying criteria. It is suggested that the current definition incorporates descriptions of the different “Coral Gardens” assemblages together with guidance on threshold densities for coral species specific to each assemblage type.
    Type of Medium: Online Resource
    ISSN: 1095-9289 , 1054-3139
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2013
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    SSG: 21,3
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  • 2
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2015
    In:  ICES Journal of Marine Science Vol. 72, No. 5 ( 2015-06-01), p. 1483-1497
    In: ICES Journal of Marine Science, Oxford University Press (OUP), Vol. 72, No. 5 ( 2015-06-01), p. 1483-1497
    Abstract: The High Seas are increasingly the subject of exploitation. Although Marine Protected Areas (MPAs) are seen as a useful tool in the sustainable management of the oceans, progress in the implementation of MPA networks in areas beyond national jurisdiction has been limited. Specifically, the criteria of “representativeness” has received little consideration. This study uses the systematic conservation planning software Marxan coupled with a biologically meaningful biophysical habitat map to investigate representative MPA network scenarios and to assess the efficiency and representativeness of the existing High Seas MPA network in the Northeast Atlantic. Habitat maps were created based on the layers of water mass structure and seabed topography resulting in 30 different habitats, in six distinct regions. Conservation targets were set at 10 and 30% representation of each habitat within the final network. Two portfolios were created. The first portfolio (P1) ignored the presence of the existing MPA network within the study area allowing a non-biased selection of planning units (PUs) or sites to be chosen. The second (P2) enforced the selection of areas within the existing MPA network. Efficiency was measured as the difference in the percentage area contained within the “best scenario” MPAs from the un-bias run (P1) compared with (P2). Representativety of the existing network was assessed through the investigation of the properties of PUs included within MPAs in the “best scenario” Marxan output of P2. The results suggest that the current MPA network is neither efficient nor representative. There were clear differences in the spatial distribution of PUs selected in P1 compared with P2. The area required to be protected to achieve that the representation of 10 and 30% of each habitat was 8–10 and 1–4% higher, respectively, in P2 compared with P1. Abyssal areas in all regions are underrepresented within the current MPA network.
    Type of Medium: Online Resource
    ISSN: 1095-9289 , 1054-3139
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2015
    detail.hit.zdb_id: 2463178-4
    detail.hit.zdb_id: 1468003-8
    detail.hit.zdb_id: 29056-7
    SSG: 12
    SSG: 21,3
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  • 3
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2014
    In:  ICES Journal of Marine Science Vol. 71, No. 4 ( 2014-06-01), p. 899-906
    In: ICES Journal of Marine Science, Oxford University Press (OUP), Vol. 71, No. 4 ( 2014-06-01), p. 899-906
    Abstract: New high-resolution image data obtained from the Hebrides Terrace Seamount and analysed by ourselves and Henry and Roberts (Henry, L-A., and Roberts, J. M. Recommendations for best practice in deep-sea habitat classification: Bullimore et al. as a case study. ICES Journal of Marine Science, 71: 895–898.), suggested that we may have misidentified Solenosmilia variabilis as either Lophelia pertusa or Madrepora oculata in a previously analysed dataset from the Anton Dohrn Seamount (published in Bullimore et al., 2013). Therefore, we undertook a reanalysis of our entire image data holdings from multiple sample sites and identified possible records of S. variabilis from four sites previously sampled: Anton Dohrn Seamount, Rockall Bank, George Bligh Bank and the Hatton-Rockall Basin. The reanalysis of our image data holdings together with historic data from the wider literature suggests that, in the Northeast Atlantic region, S. variabilis is distributed from 888–2803 m (mean ∼1500 m) with reef habitat present only on Anton Dohrn Seamount. In this paper we discuss the use of video and imagery as a survey and monitoring too and make recommendations of best practice in data acquisition and analysis. We highlight the need for the development of training materials for deep-sea field identification in order to achieve reliable, replicable and comparable datasets among observers, and suggest possible quality assurance procedures.
    Type of Medium: Online Resource
    ISSN: 1054-3139 , 1095-9289
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2014
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    detail.hit.zdb_id: 1468003-8
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    SSG: 12
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  • 4
    In: ICES Journal of Marine Science, Oxford University Press (OUP), Vol. 68, No. 2 ( 2011-01-01), p. 265-280
    Abstract: Heymans, J. J., Howell, K. L., Ayers, M., Burrows, M. T., Gordon, J. D. M., Jones, E. G., and Neat, F. 2011. Do we have enough information to apply the ecosystem approach to management of deep-sea fisheries? An example from the West of Scotland. – ICES Journal of Marine Science, 68: 265–280. There is currently a global call for more use of an ecosystem approach to fisheries management (EAFM), and ecosystem models such as Ecopath with Ecosim (EwE) are being used to provide a holistic view of ecosystem–fisheries interactions. Although these can be useful for an EAFM, the relative paucity of data available for deep-sea ecosystems raises concerns whether we can effectively apply an EAFM to the deep sea. The deep-sea ecosystem off the west coast of Scotland has been studied for longer and in more detail than most. This study assimilates the significant published and unpublished information available on this ecosystem into an EwE model. The results suggest that there are sufficient data available to construct an ecosystem model, but the quality of the data varies and serious potential sources of error are present in biomass and discard estimates. The assumptions needed to produce a model are varied and must be considered when interpreting the outputs of the model. Ecosystem modelling provides a unique view of the deep-water ecosystem and facilitates hypothesis development concerning predator–prey and inter-fishery interactions. Sharks are used to illustrate the benefits of using an ecosystem model to describe changes in their biomass and their prey species. The results show that both fishing for sharks and fishing for their prey affect the biomass of sharks.
    Type of Medium: Online Resource
    ISSN: 1095-9289 , 1054-3139
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2011
    detail.hit.zdb_id: 2463178-4
    detail.hit.zdb_id: 1468003-8
    detail.hit.zdb_id: 29056-7
    SSG: 12
    SSG: 21,3
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  • 5
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2013
    In:  ICES Journal of Marine Science Vol. 70, No. 6 ( 2013-09-01), p. 1198-1205
    In: ICES Journal of Marine Science, Oxford University Press (OUP), Vol. 70, No. 6 ( 2013-09-01), p. 1198-1205
    Abstract: Holt, R. E., Foggo, A., Neat, F. C., and Howell, K. L. 2013. Distribution patterns and sexual segregation in chimaeras: implications for conservation and management. – ICES Journal of Marine Science, 70: 1198–1205. Chimaeras such as Chimaera monstrosa and Hydrolagus mirabilis are commonly found in commercial bycatch of deep-sea fisheries in the Northeast Atlantic. Very little information exists on their life history, ecology or behaviour. Segregation of populations by sex and/or age classes has been demonstrated in several elasmobranchs, but whether segregation occurs in chimaeras, and if so what mechanisms are involved, remains unknown. This study investigates the distribution and sexual segregation of four species of chimaera (C. monstrosa, H. mirabilis, C. opalescens n. sp. and Harriotta raleighana) in relation to sex, size (maturity) class, bottom depth, and latitude. Data were obtained from annual trawl surveys undertaken by Marine Scotland, Aberdeen, from 1998–2009, at 400–2000 m in the Northeast Atlantic (55–59°N 5–11°W). A factorial General Linear Model (GLM) with planned contrasts indicated complex patterns of age- and sex-related segregation. All adult males and females were sexually segregated by depth: in all four species investigated females occurred at greater depths than males. Potential birthing grounds were identified for H. mirabilis. Latitudinal spatial segregation was not evident in relation to sex or maturity stage. The patterns of segregation reported here suggest a potential for differential exploitation of the sexes by spatially focused fisheries.
    Type of Medium: Online Resource
    ISSN: 1095-9289 , 1054-3139
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2013
    detail.hit.zdb_id: 2463178-4
    detail.hit.zdb_id: 1468003-8
    detail.hit.zdb_id: 29056-7
    SSG: 12
    SSG: 21,3
    Location Call Number Limitation Availability
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  • 6
    In: FEMS Microbes, Oxford University Press (OUP), Vol. 4 ( 2023-01-17)
    Abstract: Global antimicrobial resistance is a health crisis that can change the face of modern medicine. Exploring diverse natural habitats for bacterially-derived novel antimicrobial compounds has historically been a successful strategy. The deep-sea presents an exciting opportunity for the cultivation of taxonomically novel organisms and exploring potentially chemically novel spaces. In this study, the draft genomes of 12 bacteria previously isolated from the deep-sea sponges Phenomena carpenteri and Hertwigia sp. are investigated for the diversity of specialized secondary metabolites. In addition, early data support the production of antibacterial inhibitory substances produced from a number of these strains, including activity against clinically relevant pathogens Acinetobacter baumannii, Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Staphylococcus aureus. Draft whole-genomes are presented of 12 deep-sea isolates, which include four potentially novel strains: Psychrobacter sp. PP-21, Streptomyces sp. DK15, Dietzia sp. PP-33, and Micrococcus sp. M4NT. Across the 12 draft genomes, 138 biosynthetic gene clusters were detected, of which over half displayed less than 50% similarity to known BGCs, suggesting that these genomes present an exciting opportunity to elucidate novel secondary metabolites. Exploring bacterial isolates belonging to the phylum Actinomycetota, Pseudomonadota, and Bacillota from understudied deep-sea sponges provided opportunities to search for new chemical diversity of interest to those working in antibiotic discovery.
    Type of Medium: Online Resource
    ISSN: 2633-6685
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2023
    detail.hit.zdb_id: 3053584-0
    Location Call Number Limitation Availability
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