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  • PANGAEA  (64)
  • Nature  (2)
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  • 1
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    PANGAEA
    In:  Supplement to: Häfker, N Sören; Teschke, Mathias; Last, Kim; Pond, David W; Hüppe, Lukas; Meyer, Bettina (2018): Calanus finmarchicus seasonal cycle and diapause in relation to gene expression, physiology, and endogenous clocks. Limnology and Oceanography, https://doi.org/10.1002/lno.11011
    Publication Date: 2023-03-16
    Description: The copepod Calanus finmarchicus plays a crucial role in the north Atlantic food web. Its seasonal life cycle involves reproduction and development in surface waters before overwintering in diapause at depth. Although diapause has been studied for more than a century, the factors responsible for the initiation and termination of it are still unclear. Endogenous clocks have been identified as potent tools for photoperiod measurement and seasonal rhythmicity in many terrestrial species, but knowledge of these remains scarce in the marine realm. Focusing on the dominant CV copepodid stage, we sampled a population of C. finmarchicus from a Scottish sea loch to characterize population dynamics, several physiological parameters, and diel and seasonal expression rhythms of 35 genes representing different metabolic pathways, including the circadian clock machinery. This generated a detailed overview of the seasonal cycle of C. finmarchicus including the most extensive field dataset on circadian clock gene expression in a marine species to date. Gene expression patterns revealed distinct gene clusters upregulated at different phases of the copepod's seasonal cycle. While diel clock cycling was restricted to the active spring/summer phase, many clock genes exhibited the highest expression during diapause. Our results provide new insights into diapause on physiological and genetic levels. We suggest that photoperiod, in interaction with internal and external factors (lipid content, temperature, food availability) and the endogenous clock mechanism, plays an important role in the timing of diapause in C. finmarchicus.
    Keywords: AWI_BioOce; Biological Oceanography @ AWI
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 15.5 kBytes
    Location Call Number Limitation Availability
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  • 2
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    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-03-16
    Keywords: Acoustic Doppler Current Profiling (ADCP), TRDI Ocean Surveyor, 153.6 kHz; ANT-XXIX/7; AWI_PhyOce; CT; File content; File name; File size; Physical Oceanography @ AWI; Polarstern; PS81; PS81/7-track; Underway cruise track measurements; Uniform resource locator/link to raw data file; Weddell Sea
    Type: Dataset
    Format: text/tab-separated-values, 40 data points
    Location Call Number Limitation Availability
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  • 3
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    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-03-16
    Keywords: ANT-XXIX/7; Attenuation, optical beam transmission; AWI_PhyOce; Calculated; Computed; Conductivity; CTD, SEA-BIRD SBE 911plus, SN 0321; CTD/Rosette; CTD-RO; Date/Time of event; Density, sigma-theta (0); DEPTH, water; Elevation of event; Event label; Fluorometer; Fluorometer, Dr. Haardt Instruments; Ice Camp 1; Ice Camp 2; Latitude of event; Longitude of event; Number of observations; Oxygen; Oxygen saturation; Physical Oceanography @ AWI; Polarstern; Pressure, water; PS81; PS81/519-1; PS81/520-1; PS81/521-1; PS81/522-1; PS81/523-1; PS81/524-1; PS81/525-1; PS81/526-1; PS81/527-1; PS81/528-1; PS81/529-1; PS81/530-1; PS81/531-1; PS81/532-1; PS81/533-1; PS81/534-1; PS81/537-2; PS81/538-2; PS81/539-2; PS81/540-2; PS81/541-2; PS81/542-2; PS81/543-1; PS81/544-1; PS81/545-1; PS81/546-1; PS81/547-1; PS81/548-1; PS81/550-1; PS81/552-1; PS81/555-11; PS81/555-16; PS81/555-24; PS81/555-37; PS81/555-42; PS81/555-45; PS81/556-1; PS81/557-3; PS81/560-3; PS81/562-1; PS81/565-3; PS81/566-16; PS81/566-28; PS81/566-32; PS81/566-5; PS81/570-2; PS81/576-3; PS81/583-1; PS81/587-5; PS81/588-1; PS81/589-1; PS81/590-1; PS81/591-1; PS81/592-1; PS81/593-1; PS81/594-1; PS81/595-1; PS81/596-1; PS81/597-1; PS81/598-1; PS81/599-1; PS81/600-1; PS81/601-1; PS81/602-1; Salinity; Scotia Sea; South Atlantic Ocean; Temperature, water; Temperature, water, potential; Weddell Sea
    Type: Dataset
    Format: text/tab-separated-values, 1137546 data points
    Location Call Number Limitation Availability
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  • 4
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    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-03-16
    Keywords: ANT-XXXIII/3; Calculated; Course; CT; DATE/TIME; LATITUDE; LONGITUDE; Polarstern; PS112; PS112-track; Speed; Underway cruise track measurements
    Type: Dataset
    Format: text/tab-separated-values, 14206 data points
    Location Call Number Limitation Availability
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  • 5
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    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-03-16
    Keywords: Acoustic Doppler Current Profiling (ADCP), TRDI Ocean Surveyor, 153.6 kHz; ANT-XXXIII/3; AWI_PhyOce; Comment; CT; File name; Physical Oceanography @ AWI; Polarstern; PS112; PS112-track; Underway cruise track measurements; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 33 data points
    Location Call Number Limitation Availability
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  • 6
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    PANGAEA
    In:  Supplement to: Häfker, N Sören; Meyer, Bettina; Last, Kim; Pond, David W; Hüppe, Lukas; Teschke, Mathias (2017): Circadian clock involvement in zooplankton diel vertical migration. Current Biology, 27(14), 2194-2201.e3, https://doi.org/10.1016/j.cub.2017.06.025
    Publication Date: 2023-01-13
    Description: Genetic clocks are a ubiquitous ancient and adaptive mechanism enabling organisms to anticipate environmental rhythms and to regulate behavioral, physiological and behavioral processes accordingly. Whilst terrestrial circadian clocks are well studied and understood, knowledge about the clock systems in marine organisms is still limited. This is particularly true for abundant species displaying large-scale rhythms like diel vertical migration (DVM) that contribute significantly to shaping their respective ecosystems. Here, we describe endogenous and highly rhythmic patterns in the biology of the ecologically important and highly abundant planktic copepod Calanus finmarchicus. This species shows circadian rhythms of DVM, metabolism, and most core circadian clock genes (clock, period1, period2, timeless, cryptochrome2, clockwork orange) in the laboratory. In the field, copepods from shallow water (0-50m) have more robust rhythmic clock gene oscillations than those caught in deeper water (140-50m). Further, peak expressions of clock genes generally occurred at either sunset or sunrise coinciding with peak migration times. Providing one of the first field investigations of clock gene rhythmicity in a marine species this study further couples clock genes measurements with laboratory and field data on DVM. While the mechanistic connection remains elusive, our results imply a high degree of causality between clock gene expression and one of the planet's largest daily migration of biomass. This could increase zooplankton fitness by optimizing the temporal trade-off between feeding and predator avoidance.
    Type: Dataset
    Format: application/zip, 201.7 kBytes
    Location Call Number Limitation Availability
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  • 7
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    PANGAEA
    In:  Supplement to: Tremblay, Nelly; Werner, Thorsten; Hünerlage, Kim; Buchholz, Friedrich; Abele, Doris; Meyer, Bettina; Brey, Thomas (2014): Euphausiid respiration model revamped: Latitudinal and seasonal shaping effects on krill respiration rates. Ecological Modelling, 291, 233-241, https://doi.org/10.1016/j.ecolmodel.2014.07.031
    Publication Date: 2023-02-16
    Description: Euphausiids constitute major biomass component in shelf ecosystems and play a fundamental role in the rapid vertical transport of carbon from the ocean surface to the deeper layers during their daily vertical migration (DVM). DVM depth and migration patterns depend on oceanographic conditions with respect to temperature, light and oxygen availability at depth, factors that are highly dependent on season in most marine regions. Changes in the abiotic conditions also shape Euphausiid metabolism including aerobic and anaerobic energy production. Here we introduce a global krill respiration model which includes the effect of latitude (LAT), the day of the year of interest (DoY), and the number of daylight hours on the day of interest (DLh), in addition to the basal variables that determine ectothermal oxygen consumption (temperature, body mass and depth) in the ANN model (Artificial Neural Networks). The newly implemented parameters link space and time in terms of season and photoperiod to krill respiration. The ANN model showed a better fit (r**2=0.780) when DLh and LAT were included, indicating a decrease in respiration with increasing LAT and decreasing DLh. We therefore propose DLh as a potential variable to consider when building physiological models for both hemispheres. We also tested for seasonality the standard respiration rate of the most common species that were investigated until now in a large range of DLh and DoY with Multiple Linear Regression (MLR) or General Additive model (GAM). GAM successfully integrated DLh (r**2= 0.563) and DoY (r**2= 0.572) effects on respiration rates of the Antarctic krill, Euphausia superba, yielding the minimum metabolic activity in mid-June and the maximum at the end of December. Neither the MLR nor the GAM approach worked for the North Pacific krill Euphausia pacifica, and MLR for the North Atlantic krill Meganyctiphanes norvegica remained inconclusive because of insufficient seasonal data coverage. We strongly encourage comparative respiration measurements of worldwide Euphausiid key species at different seasons to improve accuracy in ecosystem modelling.
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 350.8 kBytes
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  • 8
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    PANGAEA
    In:  Supplement to: Pape, Carsten; Teschke, Mathias; Meyer, Bettina (2008): Melatonin and its possible role in mediating seasonal metabolic changes of Antarctic krill, Euphausia superba. Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology, 149(4), 426-434, https://doi.org/10.1016/j.cbpa.2008.02.001
    Publication Date: 2023-03-16
    Description: Melatonin, the chief secretory product of the vertebrate pineal gland is suspected to be a ubiquitous molecule principally involved in the transduction of photoperiodic information. Besides vertebrates, melatonin has been detected throughout phylogeny in numerous non-vertebrate taxa. In the present study, the occurrence of melatonin in Antarctic krill Euphausia superba and its possible role in mediating seasonal metabolic changes was evaluated. Melatonin was quantified by enzyme linked immunosorbent assay (ELISA) in high performance liquid chromatography (HPLC) purified extracts of eyestalks and hemolymph of krill sampled in the Lazarev Sea during the Antarctic winter and summer. In addition, oxygen uptake rates and the activities of the metabolic enzyme malate dehydrogenase (MDH) were recorded to assess the metabolic status of krill. Validation of melatonin measurements was carried out on the basis of three different extraction methods with parallel determination of melatonin by ELISA in crude extracts and in HPLC purified extracts, and after derivatization of melatonin under alkaline conditions in the presence of hydrogen peroxide. A significantly higher respiration rate and MDH activity was found in summer krill than in winter krill indicating that krill was in a state of reduced metabolic activity during winter. However, neither during winter nor during summer there were detectable melatonin concentrations in the visual system or hemolymph of krill. Based on these results, we question a mediating role of melatonin in the control of seasonal metabolic changes in Antarctic krill in particular and its physiological significance in krill in general.
    Keywords: ANT-XXIII/2; ANT-XXIII/6; AWI_BioOce; Biological Oceanography @ AWI; Polarstern; PS69; PS69/043-2; PS69/046-1; PS69/078-1; PS69/092-1; PS69/474-1; PS69/489-1; PS69/497-1; PS69/506-7; PS69/518-1; PS69/520-1; PS69/534-1; Rectangular midwater trawl; RMT
    Type: Dataset
    Format: application/zip, 14 datasets
    Location Call Number Limitation Availability
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  • 9
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    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-03-16
    Keywords: ANT-XXIX/7; AWI_PhyOce; CT; DATE/TIME; DEPTH, water; LATITUDE; LONGITUDE; Physical Oceanography @ AWI; Polarstern; PS81; PS81/7-track; Salinity; Temperature, water; Thermosalinograph; TSG; Underway cruise track measurements; Weddell Sea
    Type: Dataset
    Format: text/tab-separated-values, 11213 data points
    Location Call Number Limitation Availability
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  • 10
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    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2023-03-16
    Keywords: ANT-XXIX/7; Calculated; Course; CT; DATE/TIME; LATITUDE; LONGITUDE; Polarstern; PS81; PS81/7-track; Speed; Underway cruise track measurements; Weddell Sea
    Type: Dataset
    Format: text/tab-separated-values, 17808 data points
    Location Call Number Limitation Availability
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