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  • 2015-2019  (3)
  • 1
    Publication Date: 2017-07-01
    Description: Protein degradation in bacteria is a highly controlled process involving proteolytic adaptors that regulate protein degradation during cell cycle progression or during stress responses. Many adaptors work as scaffolds that selectively bind cargo and tether substrates to their cognate proteases to promote substrate destruction, whereas others primarily activate the target protease. Because adaptors must bind their cognate protease, all adaptors run the risk of being recognized by the protease as substrates themselves, a process that could limit their effectiveness. Here we use purified proteins in a reconstituted system and in vivo studies to show that adaptors of the ClpXP protease are readily degraded but that cargo binding inhibits this degradation. We found that this principle extends across several adaptor systems, including the hierarchical adaptors that drive the Caulobacter bacterial cell cycle and the quality control adaptor SspB. We also found that the ability of a cargo to protect its adaptor is adaptor substrate-specific, as adaptors with artificial degradation tags were not protected even though cargo binding is unaffected. Our work points to an optimization of inherent adaptor degradation and cargo binding that ensures that robust adaptor activity is maintained when high amounts of substrate must be delivered and that adaptors can be eliminated when their tasks have been completed.
    Print ISSN: 0021-9258
    Electronic ISSN: 1083-351X
    Topics: Biology , Chemistry and Pharmacology
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Oceans 123(12), (2018): 8674-8687, doi:10.1002/2018JC013766.
    Description: A large collaborative program has studied the coupled air‐ice‐ocean‐wave processes occurring in the Arctic during the autumn ice advance. The program included a field campaign in the western Arctic during the autumn of 2015, with in situ data collection and both aerial and satellite remote sensing. Many of the analyses have focused on using and improving forecast models. Summarizing and synthesizing the results from a series of separate papers, the overall view is of an Arctic shifting to a more seasonal system. The dramatic increase in open water extent and duration in the autumn means that large surface waves and significant surface heat fluxes are now common. When refreezing finally does occur, it is a highly variable process in space and time. Wind and wave events drive episodic advances and retreats of the ice edge, with associated variations in sea ice formation types (e.g., pancakes, nilas). This variability becomes imprinted on the winter ice cover, which in turn affects the melt season the following year.
    Description: This program was supported by the Office of Naval Research, Code 32, under Program Managers Scott Harper and Martin Jeffries. The crew of R/V Sikuliaq provide outstanding support in collecting the field data, and the US National Ice Center, German Aerospace Center (DLR), and European Space Agency facilitated the remote sensing collections and daily analysis products. RADARSAT‐2 Data and Products are from MacDonald, Dettwiler, and Associates Ltd., courtesy of the U.S. National Ice Center. Data, supporting information, and a cruise report can be found at http://www.apl.uw.edu/arcticseastate
    Keywords: Arctic ; waves ; autumn ; sea ice ; Beaufort ; flux
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Publication Date: 2022-05-26
    Description: Measurements of ocean turbulence, waves, and the geometry and circulation of windrows were made over 5 days in early March in a small bay in the St. Lawrence Estuary. Measurements were made from a small zodiac and from a SWIFT drifter. Two acoustic doppler velocity profilers (ADCPs) were used from the zodiac to measure water velocity and turbulent kinetic energy (TKE) dissipation rates near the surface. The acoustic backscatter from the ADCPs was used in conjunction with a GPS to map the location and spacing of wind aligned rows of bubbles. The SWIFT drifter provided measurements of waves, wind stress, and secondary measurements of TKE dissipation rates. Imagery of the surface was taken with a GoPro camera mounted on the zodiac, and with a DJI MavicPro quadcopter.
    Description: Funding was provided by the Woods Hole Oceanographic Institute’s Postdoctoral Scholar Program and by the Interdisciplinary Award. This work was also partially supported by the Centre National d’Études Spatiales (CNES) project WAVE-ICE (PS), and the project WAVESCALE under the “Laboratoire d’Excellence” LabexMER (ANR-10-LABX-19) co-funded by a grant from the French government under the program “Investissements d’Avenir” (PS). The BicWin experiment during which this study occurred is funded by the MEOPAR Network of Centers of Excellence (DD) and is a contribution to the research program of Québec-Océan.
    Keywords: Waves ; Turbulence ; Windrows ; Langmuir
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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